Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01653 ATGGCACATGATTATGATGATAATCCTTTTTCTGTCAAAGTTGTTGTCCTACTTCTTGCCATTGGTTCAGGAGTATTTGCTGTTTCAATATATCATGTCCTAGCCATTTGGTTTTGCCACCAAGGAAGAACCACCACAAATCAAAACTCGCCGCGGCACAGTGCCGCGAGCCTTGAAGGAAGCCCATCCATATCAATAGCAGACCTAATACCAACACACAAATACCACAAGGAAAATAAAGTTGACATGATTTCAGATGACGAAGGTGGCACATGTGCCGTGTGTTTGGAAGATTTTGAGGAGGGTGAGGAGTTGAGAACTATGCCCGAATGCTTGCATTCTTTTCATGTACCATGTATTGACATGTGGCTCCATTCACATTCGAGTTGTCCCATTTGTCACGCTAGTGCCGCTCCTTCGCCAACAATGAATATTGAACATCAACACATGATAAATATGACTCCAATTGCTATCATGTAA 480 0.425 MAHDYDDNPFSVKVVVLLLAIGSGVFAVSIYHVLAIWFCHQGRTTTNQNSPRHSAASLEGSPSISIADLIPTHKYHKENKVDMISDDEGGTCAVCLEDFEEGEELRTMPECLHSFHVPCIDMWLHSHSSCPICHASAAPSPTMNIEHQHMINMTPIAIM 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01653 159 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 137 IPR044675 -
Trre9g01653 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 141 IPR013083 -
Trre9g01653 159 CDD RING-H2_EL5-like 92 133 - -
Trre9g01653 159 Pfam Ring finger domain 91 133 IPR001841 -
Trre9g01653 159 SMART ring_2 92 133 IPR001841 -
Trre9g01653 159 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Trre9g01653 159 SUPERFAMILY RING/U-box 76 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01653 Trre-Chr9 14467358 14467837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01653 37 150 C3H Transcription Factor Family AT4G10160 34.211 8.18e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01653 - - tpra:123907580 240.35