Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01652 ATGAAAAGGATTTGCTTAGAATACAGTCATAAAGAAAAATACTATTATCCTTATCCTTATTGCTTCTCTGCTTTTGTTTCTATATTTGTTATTAGGACATTCTACCGTTTCATAGCCGTTTGTTTTGTTCGCCAAGATCGAACCGCTACGAACCAAAACCCACCACAACCAACGTGGTATGCCGCGTCACTGAGCCTCAACGAAAGAACATTGTCATCCGTTGTACACCAAATTCCAACACACAAGTACCACAAGACAAATAAAGTTGACGTGGTTTCAGATGATGATGGTGGCACGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGGGAGGAGTTAAGGACTATGCCTAAGTGTTTGCACTCTTTTCATGTACCGTGTATTGACATGTGGCTCCATTCGCATCTGAGTTGCCCTATTTGCCGTGCTAGTGCCGCCCCTTTGCCGGTGGTGAACGAACATCATTGCATCATAGATATGACGAATATGGTTCCACTTGCTATCGTGCAAAGTGAAATACGTCCACACACAATAGATATTGCATAA 546 0.4286 MKRICLEYSHKEKYYYPYPYCFSAFVSIFVIRTFYRFIAVCFVRQDRTATNQNPPQPTWYAASLSLNERTLSSVVHQIPTHKYHKTNKVDVVSDDDGGTCAVCLGDFEEGEELRTMPKCLHSFHVPCIDMWLHSHLSCPICRASAAPLPVVNEHHCIIDMTNMVPLAIVQSEIRPHTIDIA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01652 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 147 IPR013083 -
Trre9g01652 181 CDD RING-H2_EL5-like 100 142 - -
Trre9g01652 181 SMART ring_2 100 141 IPR001841 -
Trre9g01652 181 Pfam Ring finger domain 99 142 IPR001841 -
Trre9g01652 181 SUPERFAMILY RING/U-box 79 147 - -
Trre9g01652 181 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Trre9g01652 181 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 145 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01652 Trre-Chr9 14454455 14455988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01652 73 163 C3H Transcription Factor Family AT3G03550 45.055 7.82e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01652 - - tpra:123904269 277.715