Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01651 ATGGCAAATGATGATGATGATCATCCTATTTATAACAACATAATTGTCCTACTTATTGTTGTGGGTTCAATTGCATTTGTTGTTGGCTCATTGTACCGAATCCTAACCATTTGGTTTTGTAACCAACAAAGCACCCCGACACATCAAAACCTCCCGCAACCACCACCGCGGTTTGCCTCGACAACAAACCTCAGTGAAAGCACATCCTCGTCAATAGTACACCTAATTCCAACACACAAGTACCACAAGAGAAATAAAGCTGACGTTGTTTCAGATGATGATGGTGACACGTGTGCCGTCTGTTTGGGAGATTTTGAGGAGGGTGAGGAATTGAAGACTATGCCTGAGTGCTTGCACTCCTTTCATGTACCGTGTATTGACATGTGGCTCCATTCACATTCGAGTTGCCCCATTTGTCGTGCCATAGCCAGTGCCGCCCCTTCCCCGACGGTGAATGAACAACATCACAGGATAGATATGAGTAATAATATGGTTCCACTTGCTATCATGCAAAGGGGATTATGGTGA 528 0.4451 MANDDDDHPIYNNIIVLLIVVGSIAFVVGSLYRILTIWFCNQQSTPTHQNLPQPPPRFASTTNLSESTSSSIVHLIPTHKYHKRNKADVVSDDDGDTCAVCLGDFEEGEELKTMPECLHSFHVPCIDMWLHSHSSCPICRAIASAAPSPTVNEQHHRIDMSNNMVPLAIMQRGLW 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01651 175 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Trre9g01651 175 CDD RING-H2_EL5-like 98 140 - -
Trre9g01651 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 144 IPR044675 -
Trre9g01651 175 Pfam Ring finger domain 96 140 IPR001841 -
Trre9g01651 175 SUPERFAMILY RING/U-box 83 145 - -
Trre9g01651 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 145 IPR013083 -
Trre9g01651 175 SMART ring_2 98 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01651 Trre-Chr9 14453417 14453944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01651 16 151 C3H Transcription Factor Family AT5G17600 35.664 3.18e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01651 - - mtr:11405522 246.899