Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01628 ATGTCTCTTCTCAGCAGATTCTTCTACAAAAGACCCCCAGATGGTTTACTTGAATTCATCGATAGAGTTTACGTTTTCGATTCATGTTTCTCAACAGAAGCATTACCAGATGGAATGTATCAGCTATATCTTCACGAAATTGTGACTGAATTAAATGAAGAGTTTCCTGAATCTTCATTTTTAGCTTTCAATTTTCGTGAGGGAGAGAAACGTAGTGATTTTGCTGAGATAATGTGTGATTATGATGTTATTGTTATGGATTATCCAAAACAATATGAGGGTTGTCCTCTTTTACCACTTTCTCTTGTTCAGCATTTTCTTCGTGTTTGTGAGAGTTGGCTTTTACTTGGTAATCATCAAAATGTGATTTTGTTTCATTGTGAAAGAGGTGGTTGGCCACTTTTGGCTTTTTTATTGGCAAGTTTGTTGATTTTTAGAAGGGTTCATAGTGGTGAACGTAGGACACTTGATATGGTTCATAGAGAAGCACCTAAGGGTTTGTTGCAGTTGTTGTCGCCTTTGAATCCTTTGCCTTCGCAGCTTCGTTATATTCAATATGTCGCGAGGAGGAATATTGCTCCTGAGTGGCCTCCACCTGAGAGGGCTTTATCTTTGGATTGTGTTATTCTTAGGGGAATTCCTAGTTTTGATTCCTCTAATGGATGTAGGCCAATGTTTAGGATTTTCGGGAGGAATTTGCTTAGTAGAGGTGGACTTTCTACTCAGATGATTTATAACATGCACAAGAAGAAGCATTTGAGGCATTATCGCCAGGTAGACTGTGATGTGATTAAGATTGATATTCAATGTTTAGTACAAGGAGATGTGGTTTTGGAGTGTGTCCATTTGGATTTGGATCCGGAAAGGGAAGTGATGATGTTTCGTGTGATGTTCAATACAGCATTTATTCGATCCAACATATTAATGCTGAACACTGAAAACTTGGATATTCTTTGGGATTCGAAGGAGCGGTATCCGAAAGGCTTTCGGGCTGAGGTTTTATTTGGGGAGGTTGAAAACATAAGTCCTCAGAGAGCTCCGACAGAGACAACCATTTTGAATGGCGAGGAGAAAGGTGGATTACCCATTGAAGCATTTTCAAAAGTTCAAGAACTTTTTAGTGGAGTGGATTGGGTTGACAGCGGTGATGCTGCAGCAGTGTGGCTGCTTAGACAGCTCAATGTCTTAAATGATGCCAAAGAGTTTTCGAGGTTGCAAGGTAAAGGAAGTTGGTTTTCGTCGCCAGCTGACTCTGAAGAAGAAAATAATGAATCAAGTGTTGCTGATAGTTCAGATGAGGCCTCTGATGTTACTCCCAATTCTTTTGCTGATCCTTCAAAATTATTGACATCTGACACCCCTGATTTGGATAATTTAGCTTTGGAAAACAATGGTGGAAATTGTGTAAATGCTGCTGGTCCACCTCCACCCCCTCCCCCTTTAATGGCCAGCAATGCTAGCAGTGATTCCGCATTGCCTCCACCTCCTCCTTCAGGACTTGTACATACAAGTTCAGTCCCATTACCTCCACCCCCACCACCTCCTCCAGGATTTGCACGAACAGGTTCAACCCCACCACCCCCACCTCCCCCTCCTCCTGGTCCTGTACGAACAAGTTCAATCCCACCACCACCGCCTCTTCCAGGTACTTTACAAATAGGGTCATCCCTGCCCCCTCCACCTCCACCTCTTCCAGGTGTTACTCGGTCAGCCCCACCACCTCCACCTCCACCTCCTCCAGGTCTTACACAAATAGGTTTAACCCCACCGCCTCCACCACCTCCTCCTCCTCCAGTTCCTGTACGAATAGGTTCCACCCCGCCACCTCCACCACCTCCTCCAGGTTCAATACAAACAGGTTCTACCCCACCACCTCCACCCCCTCCTCCTCCTCCAGTTCCTGTACGAATAGGTTCCGCCCCGCCACCTCCTCCAGGTTCAATACAAACAGGTTCTACCCCACCACCTCCACCCCCACCACCTCCAGGATCTACACGAACAGGATCAGTTCCACCACCTCCACCGCCCCCTCCGGGTTCTACACAAACAGGATCATCCCCACCACCTCCTCCTCCACCACCGCCAGGCCCTACCCGAATAGGATCAGCCCCACCACCTCCCCCACCTCCTCCAGGTCCTGCACGAACAAGTTCAGCTCCTCCACCTCCACCACCCCCTCCAGGTGCACGAACAGGTTCAGCTCCACCACCTCCACCACCTCCTCCAGGTGCACAACCAGGTTCAGCTCCACCTCCGCCACCACCACCACCAGGTTCTGTTCGAGCAGGTTCTGCCCCACCACCTCCACCTCCTCCAGGTGTACGGTCGGGTTCAGCTCCGCCAGCACCAAAGCCTCCAAATGCTCCTCCTCCACCACCACCTGGTCGTGGTTCAGTGCCGGCACCTCCGCTTACTGCAGGCAAGGCCTCTAGTGTGCCTCCACCACCAAGCAAAGCTTCTTCAGCAACAACAAATGTGGGAAGAGGTCGTGGTACTGGTGCTATTGCTGCTAAGAAAACTTTGTTAAAGCCCCTACATTGGGTGAAAGTCTCACGAGCAGTACAAGGGAGTCTATGGGCTGATTCACAGAAACAAGGAAGTGGTTCAAGGGCCCCTGAAATAGACATATCGGAACTTGAGACCCTGTTTTCAGCAGCATCTATTTCTGATGGAAATAGTACTAGAGGTGGAGTTCGGCGTGGTTCTAATATTAACAAACCTGAGAAAGTACAGTTGGTTGACTTGCGCAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAGTGCAGTTTTGGCATTGGATTCTGGTGTTCTGGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCCACAAAGGAAGAGATGGAGATACTGAAGAACTATGCTGGGAACAAGGATATGCTTGGGAAGTGTGAGCAGTTTTTTATGGAGCTGATGAAAGTTCCACGAGTAGAAGCCAAGTTAAGAGTGTTTGCTTTTAAAATCACCTTTACTGCTCAGGTGAGCGATTTAAGGATAAATTTGAATACAATCAACGATGCAACCAGAGAGGTCAAAGAATCGGTAAAATTGCGTCAAATAATGCAGACTATTCTTACGTTGGGCAACGCTTTGAATCAGGGAACAGCACGAGGATCAGCAGTAGGTTTCAAATTGGACAGCCTTCTCAAATTATCTGATACCCGTGCAAGAAATAATAAAATGACTTTAATGCACTATTTGTGTAAGCTTCTTGCTGAGAAAATGCCAGAATTGATAGACTTTGACAAGGATCTTGTGCATTTAGAAGGTGCTTCTAAGATCCAACTAAAAGCATTAGCTGAAGAAATGCAAGCTGTGCATAAAGGTTTGGAAAAAGTTGAGCAAGAACTAACTGCTTCTGAAAATGATGGTGCTATATCTTCAGGATTTCGCAAGGTGTTGAAGAATTTTCTTGATTTTGCTGAAGCCGATGTGAGGTCACTTATATCATTGTATGCCGATGTGGGAAGAAATGCCGATTCTTTGTCCCAATACTTTGGGGAGGATCCATCTAGGTGCCCCTTTGAACAAGTGACACAAATACTTGTTGTCTTTGTAAAGACCTTCAAAAAGTCAAGGGAGGAGAACGAAAGGTTAGCAGATGCCGAGAAAAAGAAATTAGAGAAAGAAGCCATGAAGGACAAGGCAGCAAATAACATGCATCCTAGAAAAGATGTTGTTCGATAG 3738 0.4559 MSLLSRFFYKRPPDGLLEFIDRVYVFDSCFSTEALPDGMYQLYLHEIVTELNEEFPESSFLAFNFREGEKRSDFAEIMCDYDVIVMDYPKQYEGCPLLPLSLVQHFLRVCESWLLLGNHQNVILFHCERGGWPLLAFLLASLLIFRRVHSGERRTLDMVHREAPKGLLQLLSPLNPLPSQLRYIQYVARRNIAPEWPPPERALSLDCVILRGIPSFDSSNGCRPMFRIFGRNLLSRGGLSTQMIYNMHKKKHLRHYRQVDCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNTENLDILWDSKERYPKGFRAEVLFGEVENISPQRAPTETTILNGEEKGGLPIEAFSKVQELFSGVDWVDSGDAAAVWLLRQLNVLNDAKEFSRLQGKGSWFSSPADSEEENNESSVADSSDEASDVTPNSFADPSKLLTSDTPDLDNLALENNGGNCVNAAGPPPPPPPLMASNASSDSALPPPPPSGLVHTSSVPLPPPPPPPPGFARTGSTPPPPPPPPPGPVRTSSIPPPPPLPGTLQIGSSLPPPPPPLPGVTRSAPPPPPPPPPGLTQIGLTPPPPPPPPPPVPVRIGSTPPPPPPPPGSIQTGSTPPPPPPPPPPVPVRIGSAPPPPPGSIQTGSTPPPPPPPPPGSTRTGSVPPPPPPPPGSTQTGSSPPPPPPPPPGPTRIGSAPPPPPPPPGPARTSSAPPPPPPPPGARTGSAPPPPPPPPGAQPGSAPPPPPPPPGSVRAGSAPPPPPPPGVRSGSAPPAPKPPNAPPPPPPGRGSVPAPPLTAGKASSVPPPPSKASSATTNVGRGRGTGAIAAKKTLLKPLHWVKVSRAVQGSLWADSQKQGSGSRAPEIDISELETLFSAASISDGNSTRGGVRRGSNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLSAVLALDSGVLDIDQVENLIKFCPTKEEMEILKNYAGNKDMLGKCEQFFMELMKVPRVEAKLRVFAFKITFTAQVSDLRINLNTINDATREVKESVKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELIDFDKDLVHLEGASKIQLKALAEEMQAVHKGLEKVEQELTASENDGAISSGFRKVLKNFLDFAEADVRSLISLYADVGRNADSLSQYFGEDPSRCPFEQVTQILVVFVKTFKKSREENERLADAEKKKLEKEAMKDKAANNMHPRKDVVR 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01628 1245 FunFam Formin-like protein 832 1218 - -
Trre9g01628 1245 Pfam Formin Homology 2 Domain 837 1207 IPR015425 -
Trre9g01628 1245 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Trre9g01628 1245 SMART PTEN_C2_2 198 960 IPR014020 -
Trre9g01628 1245 MobiDBLite consensus disorder prediction 814 828 - -
Trre9g01628 1245 SMART it6_source 438 1245 IPR015425 -
Trre9g01628 1245 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Trre9g01628 1245 MobiDBLite consensus disorder prediction 408 830 - -
Trre9g01628 1245 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 187 IPR029021 -
Trre9g01628 1245 Coils Coil 1113 1133 - -
Trre9g01628 1245 MobiDBLite consensus disorder prediction 1212 1245 - -
Trre9g01628 1245 ProSiteProfiles C2 tensin-type domain profile. 200 338 IPR014020 -
Trre9g01628 1245 MobiDBLite consensus disorder prediction 490 800 - -
Trre9g01628 1245 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 338 IPR035892 -
Trre9g01628 1245 Coils Coil 1207 1236 - -
Trre9g01628 1245 Gene3D Formin, FH2 domain 833 1217 IPR042201 -
Trre9g01628 1245 MobiDBLite consensus disorder prediction 428 465 - -
Trre9g01628 1245 SUPERFAMILY Formin homology 2 domain (FH2 domain) 907 1235 - -
Trre9g01628 1245 PANTHER FORMIN-J 750 1235 - -
Trre9g01628 1245 Gene3D - 197 341 - -
Trre9g01628 1245 ProSiteProfiles Formin homology-2 (FH2) domain profile. 832 1232 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01628 Trre-Chr9 14217522 14225419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01628 1 526 FH2 protein (formin) Gene Family AT1G31810 68.620 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01628 - - psat:127119864 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01628 9 14217522 14225419 Trre9g01628 9 14217522 14225419 ECH