Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01611 ATGGAGGAGAACTACGAGGTTCTAGAGGAACTTCACAACGTTGAAGCCGAGATAGAAGATGTTCAAGAACAAATTAGGGCGTTAATTGAAAAGCAAGAGAGGTTGTATGAGAGAAAATCTGAGTTGAATTCTATTCTGGAAGCTTGTAAAGAATCTGAAAATCAAGTCAATAATGCAAGTTCAAGTACTGTGGAGAATTGGAATGGACCATTTGAATGGGATTCTCAAGCTGATGATCTTAGATTAAACATTTTTGGTATTGCATCTTACCGTGCAAATCAAAAAGAGATTATTAATGCCATACTGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTAATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCGTTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGCATCCCAGCACATATGTTAACTTCAACAACAAGTAAGGACAATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGCGAGGGGGAACTCAAAATATTATATGTTACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAGTGCCATCATGCTGGTCGTTTCTCTCTAATTTCAATTGATGAGGCACATTGCTGCAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAACCTCGGTATTCTCAAGACTCAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCACATTCGTAGATGTGTCAAATTTGTCAGCACCGTCAATAGGCCAAATTTATTTTATATGGTAAAGGAAAAGTCATCCGTCAGTAAGGTGGTCGTTGACGAAATCGCTGAATTCATTCAAGAATCTTATCCAAATCATGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCGAAGGAGCTAAGGGAGAGAGGAATTTCAGCTGGTCATTATCATGCAGATATGGATGTAAATGATCGTGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTACAGGTCATAGTTGGTACGGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCCGGTCGAGATGGGCATCCCTCTGAATGCCTATTATACTTCAGACCTGGTGATGTTCCCCGGCAGAGTTCAATGGTTTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATAGTGCGATATTGTCAGTCCAAAAGACAATGCCGACGGAGTGCCATTTTTCGGCATTTTGCTGAGCCATTACAAGAGTGCAACGGGATGTGCGACATATGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCTCGGCATGCAAAATTGTTGGTTTCTTTGTTGCAAGATATTCAAGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTCGAGAAAATGAAAACAAAACAGAAGGAAATAGGTTCTGACTTAAAACGAGAGGAAATGGAGCAGCTCATCTTACACCTTTTACTGGAGCGTGTTTTGAAAGAAGAATTCCAGCATACAGCTTATTCTACAAATGCTTACATTACTGTAGGGCCATTGGCGAAGCAAATTTTGCAAGGGAAGAAGACTGTGAAGCTTGAGGTTTCTACAGAAGAGAAAACTAAAGCTTCTGCAAGATTGAAACGTGGCCTCGGTTCATCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCAATCATGGAGGAATACTCCCACACTCTGTCTTGTCTACTCAACAAATCAGCTTACTATGTTCTCAAAAACCAAACTCACTGGAAGAGGCAAGCTTTATTCATTTGGAGAAAGTAATTGGAAAATTGAAGACCCAAAAGTATGGAAATAAGATTCTTGAGCATATTGTAAAATTTACTGATTTCAAGCCGACCGATGAACAAGTAAGTGATGGTAGAGCCGCAAAAAAGTCAAAAACCAAGAAGAACCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCACGATAG 2127 0.4057 MEENYEVLEELHNVEAEIEDVQEQIRALIEKQERLYERKSELNSILEACKESENQVNNASSSTVENWNGPFEWDSQADDLRLNIFGIASYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNGIALVVSPLLSLIQDQVMGLTALGIPAHMLTSTTSKDNEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRFSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQESYPNHESGIVYCFSRKECEQVAKELRERGISAGHYHADMDVNDREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGHPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAIFRHFAEPLQECNGMCDICAFSSEVKEVDVSRHAKLLVSLLQDIQASDQRSTMLQLVEKMKTKQKEIGSDLKREEMEQLILHLLLERVLKEEFQHTAYSTNAYITVGPLAKQILQGKKTVKLEVSTEEKTKASARLKRGLGSSGLELKLDELRKELSSNHGGILPHSVLSTQQISLLCSQKPNSLEEASFIHLEKVIGKLKTQKYGNKILEHIVKFTDFKPTDEQVSDGRAAKKSKTKKNLVLIESSEDEAR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01611 708 SMART RQC_2 485 582 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre9g01611 708 CDD SF2_C_RecQ 281 417 - -
Trre9g01611 708 Pfam RecQ zinc-binding 420 476 IPR032284 -
Trre9g01611 708 Coils Coil 4 38 - -
Trre9g01611 708 SMART ultradead3 86 289 IPR014001 -
Trre9g01611 708 Gene3D - 10 280 IPR027417 -
Trre9g01611 708 SMART helicmild6 327 408 IPR001650 -
Trre9g01611 708 PANTHER DNA HELICASE RECQ FAMILY MEMBER 68 642 - -
Trre9g01611 708 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 447 IPR001650 -
Trre9g01611 708 FunFam ATP-dependent DNA helicase 599 674 - -
Trre9g01611 708 NCBIfam RecQ family ATP-dependent DNA helicase 83 506 IPR004589 GO:0004386|GO:0006310
Trre9g01611 708 Gene3D HRDC domain 599 673 IPR044876 -
Trre9g01611 708 CDD DEXHc_RecQ1 72 280 - -
Trre9g01611 708 FunFam ATP-dependent DNA helicase 47 280 - -
Trre9g01611 708 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Trre9g01611 708 Gene3D - 281 477 IPR027417 -
Trre9g01611 708 Pfam Helicase conserved C-terminal domain 309 407 IPR001650 -
Trre9g01611 708 FunFam ATP-dependent DNA helicase 481 581 - -
Trre9g01611 708 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Trre9g01611 708 Gene3D - 481 582 IPR036388 -
Trre9g01611 708 FunFam ATP-dependent DNA helicase 281 477 - -
Trre9g01611 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 424 IPR027417 -
Trre9g01611 708 Pfam RQC domain 482 586 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01611 Trre-Chr9 14084121 14095696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01611 85 422 Eukaryotic Initiation Factors Gene Family AT3G19760 19.547 1.21e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01611 K10899 - gmx:100817635 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01611 9 14084121 14095696 Trre9g01611 9 14084121 14095696 ECH