Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01610 ATGGAGGAGAACTACGAGGTTCTAGAGGAACTTCACAACGTTGAAGCCGAGATAGAAGATGTTCAAGAACAAATTAGGGCGTTAATTGAAAAGCAAGAGAGGTTGTATGAGAGAAAATCTGAGTTGAATTCTATTCTGGAAGCTTGTAAAGAATCTGAAAATCAAGTCAATAATGCAAGTTCAAGTACTGTGGAGAATTGGAATGGACCATTTGAATGGGATTCTCAAGCTGATGATCTTAGATTAAACATTTTTGGTATTGCATCTTACCGTGCAAATCAAAAAGAGATTATTAATGCCATACTGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTAATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCGTTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGCATCCCAGCACATATGTTAACTTCAACAACAAGTAAGGACAATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGCGAGGGGGAACTCAAAATATTATATGTTACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAGTGCCATCATGCTGGTCGTTTCTCTCTAATTTCAATTGATGAGGCACATTGCTGCAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAACCTCGGTATTCTCAAGACTCAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCACATTCGTAGATGTGTCAAATTTGTCAGCACCGTCAATAGGCCAAATTTATTTTATATGGTAAAGGAAAAGTCATCCGTCAGTAAGGTGGTCGTTGACGAAATCGCTGAATTCATTCAAGAATCTTATCCAAATCATGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCGAAGGAGCTAAGGGAGAGAGGAATTTCAGCTGGTCATTATCATGCAGATATGGATGTAAATGATCGTGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTACAGGTCATAGTTGGTACGGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCCGGTCGAGATGGGCATCCCTCTGAATGCCTATTATACTTCAGACCTGGTGATGTTCCCCGGCAGAGTTCAATGGTTTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATAGTGCGATATTGTCAGTCCAAAAGACAATGCCGACGGAGTGCCATTTTTCGGCATTTTGCTGAGCCATTACAAGAGTGCAACGGGATGTGCGACATATGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCTCGGCATGCAAAATTGTTGGTTTCTTTGTTGCAAGATATTCAAGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTCGAGAAAATGAAAACAAAACAGAAGGAAATAGGTTCTGACTTAAAACGAGAGGAAATGGAGCAGCTCATCTTACACCTTTTACTGGAGCGTGTTTTGAAAGAAGAATTCCAGCATACAGCTTATTCTACAAATGCTTACATTACTGTAGGGCCATTGGCGAAGCAAATTTTGCAAGGGAAGAAGACTGTGAAGCTTGAGGTTTCTACAGAAGAGAAAACTAAAGCTTCTGCAAGATTGAAACGTGGCCTCGGTTCATCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCAATCATGGAGGAATACTCCCACACTCTGTCTTGTCTACTCAACAAATCAGCTTACTATGTTCTCAAAAACCAAACTCACTGGAAGAGTTGGAGAAAGTAATTGGAAAATTGAAGACCCAAAAGTATGGAAATAAGATTCTTGAGCATATTGTAAAATTTACTGATTTCAAGCCGACCGATGAACAAGTAAGTGATGGTAGAGCCGCAAAAAAGTCAAAAACCAAGAAGAACCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCACGATAG 2112 0.4062 MEENYEVLEELHNVEAEIEDVQEQIRALIEKQERLYERKSELNSILEACKESENQVNNASSSTVENWNGPFEWDSQADDLRLNIFGIASYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNGIALVVSPLLSLIQDQVMGLTALGIPAHMLTSTTSKDNEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRFSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQESYPNHESGIVYCFSRKECEQVAKELRERGISAGHYHADMDVNDREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGHPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAIFRHFAEPLQECNGMCDICAFSSEVKEVDVSRHAKLLVSLLQDIQASDQRSTMLQLVEKMKTKQKEIGSDLKREEMEQLILHLLLERVLKEEFQHTAYSTNAYITVGPLAKQILQGKKTVKLEVSTEEKTKASARLKRGLGSSGLELKLDELRKELSSNHGGILPHSVLSTQQISLLCSQKPNSLEELEKVIGKLKTQKYGNKILEHIVKFTDFKPTDEQVSDGRAAKKSKTKKNLVLIESSEDEAR 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01610 703 FunFam ATP-dependent DNA helicase 599 669 - -
Trre9g01610 703 PANTHER DNA HELICASE RECQ FAMILY MEMBER 68 655 - -
Trre9g01610 703 SMART ultradead3 86 289 IPR014001 -
Trre9g01610 703 SMART helicmild6 327 408 IPR001650 -
Trre9g01610 703 FunFam ATP-dependent DNA helicase 281 477 - -
Trre9g01610 703 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Trre9g01610 703 Pfam Helicase conserved C-terminal domain 309 407 IPR001650 -
Trre9g01610 703 SMART RQC_2 485 582 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre9g01610 703 Gene3D HRDC domain 599 668 IPR044876 -
Trre9g01610 703 Pfam HRDC domain 604 663 IPR002121 GO:0003676
Trre9g01610 703 CDD SF2_C_RecQ 281 417 - -
Trre9g01610 703 Pfam RecQ zinc-binding 420 476 IPR032284 -
Trre9g01610 703 Pfam RQC domain 482 586 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre9g01610 703 Coils Coil 4 38 - -
Trre9g01610 703 FunFam ATP-dependent DNA helicase 481 581 - -
Trre9g01610 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 424 IPR027417 -
Trre9g01610 703 Gene3D - 481 582 IPR036388 -
Trre9g01610 703 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 447 IPR001650 -
Trre9g01610 703 NCBIfam RecQ family ATP-dependent DNA helicase 83 506 IPR004589 GO:0004386|GO:0006310
Trre9g01610 703 CDD DEXHc_RecQ1 72 280 - -
Trre9g01610 703 FunFam ATP-dependent DNA helicase 47 280 - -
Trre9g01610 703 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Trre9g01610 703 Gene3D - 10 280 IPR027417 -
Trre9g01610 703 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Trre9g01610 703 Gene3D - 281 477 IPR027417 -
Trre9g01610 703 MobiDBLite consensus disorder prediction 675 703 - -
Trre9g01610 703 SUPERFAMILY HRDC-like 604 672 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01610 Trre-Chr9 14084121 14095696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01610 85 422 Eukaryotic Initiation Factors Gene Family AT3G19760 19.547 1.18e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01610 K10899 - gmx:100817635 1171.38