Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01595 ATGAAAGAAAAAGAACCATCAAAACCATGGAGACCATTCACATCAAATTGTTGCACAACAGAAAACCAAACAATCTTAAAAAATTTCAGTAAATGCAAACCTTCACGTTCAGATTATTCTAAGAACATTGCTCCATTACCATCTTTTAGGAGACTTTCTTTTTCCGATCTTAGCCGTTCGTCTTCAACGCGAATCAATGAAGATCTTGCACTTTCTTTTGGTTCTGATTTGTGTGATTTTCAGCTGAGTGAACTTCGTGCTATTACTCAGAATTTTTCTAGTAATTATTTGCTTGGTGAAGGTGGATTTGGAACTGTTCATAAAGGTTATTTAGATGATAATTTTAGACAAGGTTTGAAAGCTCAACCTGTTGCTGTTAAGCTTTTGGATATTGAAGGTTTACAAGGACATCGTGAATGGCTCGCAGAAGTGATTTTTCTTGGTCAGTTAAGGCATCCAAATTTGGTCAAATTGATTGGATATTGTTGTGAGGATGAAGAAAGACTACTTGTCTATGAATTTATGCCAAGAGGAAGCTTGGAGAATCACTTATTTAGAAGACTAACATCACTACCTTGGGCAACAAGATTAAAAATTGCAATTGGTGCTGCTAAAGGCCTTTCTTTCTTGCATGGAGCTGAAAAACCAGTCATTTATAGAGACTTCAAGACTTCGAACGTCTTACTTGATTCCGACTTCACAGCAAAATTATCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAAGTCACATGTTACGACAAGGGTTATGGGCACATATGGATATGCAGCCCCGGAATACATCTCAACAGGACACTTGACAACAAAAAGTGATGTCTATAGCTTCGGAGTAGTCCTGCTAGAACTACTAACAGGAAGAAGAGCGACCGACAAAACAAGACCAAAGACAGAACAAAACATTGTGGATTGGACAAAACCTTACTTGAGTAGCAGTAGAAGATTAAGGTACATAATGGATCCAAGACTTGCAGGTCAATATTCTGTCAAAGGTGCAAAACAGATAGCACATTTGGCATTACAATGCATAAGTTTGCATCCTAAAGACAGACCAAGAATGGCAATGATTGTTGAAACACTTGAAAGTCTTCAACAATTTAAGGATATGGCTGTTACTAGTGGACACTGGCCTATATCATCAAAATCTACTAAAAATGGAGTATCTAATAATAATAAGGTGAAAACTAGAGCAATTAGTGCAAATCAAAAGCAATTGGTTCCAGTTAGAAGCAAAAAAGTTTGA 1266 0.3705 MKEKEPSKPWRPFTSNCCTTENQTILKNFSKCKPSRSDYSKNIAPLPSFRRLSFSDLSRSSSTRINEDLALSFGSDLCDFQLSELRAITQNFSSNYLLGEGGFGTVHKGYLDDNFRQGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWATRLKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKQIAHLALQCISLHPKDRPRMAMIVETLESLQQFKDMAVTSGHWPISSKSTKNGVSNNNKVKTRAISANQKQLVPVRSKKV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01595 421 FunFam Serine/threonine-protein kinase PBS1 175 383 - -
Trre9g01595 421 SUPERFAMILY Protein kinase-like (PK-like) 73 369 IPR011009 -
Trre9g01595 421 CDD STKc_IRAK 98 371 - -
Trre9g01595 421 Gene3D Phosphorylase Kinase; domain 1 54 174 - -
Trre9g01595 421 Gene3D Transferase(Phosphotransferase) domain 1 175 385 - -
Trre9g01595 421 ProSitePatterns Protein kinases ATP-binding region signature. 98 127 IPR017441 GO:0005524
Trre9g01595 421 Pfam Protein tyrosine and serine/threonine kinase 97 368 IPR001245 GO:0004672|GO:0006468
Trre9g01595 421 PANTHER OS01G0588500 PROTEIN-RELATED 63 372 - -
Trre9g01595 421 FunFam Serine/threonine-protein kinase BIK1 59 174 - -
Trre9g01595 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Trre9g01595 421 ProSiteProfiles Protein kinase domain profile. 92 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01595 Trre-Chr9 13957081 13959844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01595 80 384 Glycoside Hydrolase AT3G07070 51.780 1.94e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre9g01595 PK_Tyr_Ser-Thr 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01595 - - gmx:100814241 737.643