Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01585 ATGGGGTCTAGTGGCAGTAAAGCTACTACTTCTTGTAGTTCATCATCTTCTTCTTCTTCTTCTTCTTGCAGATTACAAAAGGGTCGATCCAAACGGTATATAGGTTTTCCTTCTTATTGTCTTGGAACAGCTTCTGGATCTCGTGACAGTGATAATGATGACCAGGTATGTGATCAGAATAAAGTAAATGAAAGTGATACCAACCGTAATGATATCAACTCGGATGAAGTGAAGTCAGAGTCTTTTAGAAAAGTGAAATCTGATGAAGTACCTTGTATGCCTTCTAACATTGATCTCGATGAGTGGAGTCACACTGAATCCAGAACTGCTAGCAGCTCCGCACATGGTTCTTCAACTCAGTCTACAAACCCTACAAGTCGGTTCCTTTCTCGTTTTAGTCTCATTCCGGGTAATATAAGTTTCAGACTTAGCAGAACAACCAGTTTGGGGTCATCTCGACCTTGTCCTGTTTCATCGGCAGGTCTTTCAATATTTAACAATGAAGACGAGCTTAGTCTGCATAATAGAAATGAAACTCAACAATGTAGTGATCGGCTTAATACATCTTTTGTTAATCGAGTCCCTATACAGTACCATGAAGATGCTTCTAATAATTTAAGTTCGAATGCCCCGACATTTGGCTTTGTTGGAAATTTGTCGAGCAGTCCTACGCTGTCTCCTATCCAGGATATTGTTAGAGATGGGTATGCTACACGAGACATGCCTGGTATGAACATGTTTTCTCCAAGAGTTCACAATGAAACGGGAAATCTTGAGACTAGACATATGGATAGACGAAATGGAGCTCGAGAACCCGTTGACCGCAATGTTCGTTTCAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCACCGCCGATCAGGATTGGCTGACTTCACCTTTTGCCCTCTGCAACAAGAGAGAGAATTGGGAGATGCTAGTGAGGATAGTGGAAGACAAGTAGGTGAGATTGGTACCAGAGTGTTGCCATCAAATCGTAATGCTTTAAATTCTCATACTACATCTGGATATCCTCTACCGAACATGTCTAACTCCACATTTAGCACCCAAGACTATGAGGTCGAGGCTTCACGGTCAAGAGAAACTAGATATCAGGATCTACTGGAGCATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTACATGCAGAATAACTAATCGCGATAACAATTCAAATTCAAATGATGATACAAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCTGTGGTTTTATCTTCCCGACCTTCTGTATCTTCTATCGGATCTGTCCCCGCACCTGCTGAAGTTGTTGAATCCTTACCTGTTAAATTATACACAAAATCACACAAACATCAAGAAGAACCACTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGAGAGTACTGCCTTGCCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTATGTCGAGGGGACATTTGTATATCAGATTCACTGCCAACAAGAGAGAGCTAA 1707 0.4165 MGSSGSKATTSCSSSSSSSSSSCRLQKGRSKRYIGFPSYCLGTASGSRDSDNDDQVCDQNKVNESDTNRNDINSDEVKSESFRKVKSDEVPCMPSNIDLDEWSHTESRTASSSAHGSSTQSTNPTSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSAGLSIFNNEDELSLHNRNETQQCSDRLNTSFVNRVPIQYHEDASNNLSSNAPTFGFVGNLSSSPTLSPIQDIVRDGYATRDMPGMNMFSPRVHNETGNLETRHMDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFTFCPLQQERELGDASEDSGRQVGEIGTRVLPSNRNALNSHTTSGYPLPNMSNSTFSTQDYEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRNGRCTCRITNRDNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKSHKHQEEPLQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPTRES 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01585 568 Pfam Ring finger domain 511 554 IPR001841 -
Trre9g01585 568 MobiDBLite consensus disorder prediction 1 27 - -
Trre9g01585 568 FunFam Putative RING zinc finger domain superfamily protein 481 559 - -
Trre9g01585 568 MobiDBLite consensus disorder prediction 106 125 - -
Trre9g01585 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 558 IPR013083 -
Trre9g01585 568 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 565 - -
Trre9g01585 568 MobiDBLite consensus disorder prediction 51 87 - -
Trre9g01585 568 MobiDBLite consensus disorder prediction 43 125 - -
Trre9g01585 568 MobiDBLite consensus disorder prediction 334 353 - -
Trre9g01585 568 SUPERFAMILY RING/U-box 492 560 - -
Trre9g01585 568 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Trre9g01585 568 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Trre9g01585 568 MobiDBLite consensus disorder prediction 1 28 - -
Trre9g01585 568 SMART ring_2 512 553 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01585 Trre-Chr9 13823976 13827552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01585 222 561 C3H Transcription Factor Family AT5G45290 59.885 4.10e-120 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01585 - - gmx:100815830 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01585 9 13823976 13827552 Trre9g01585 9 13823976 13827552 ECH
Trre9g01585 9 13823976 13827552 Trre15g02439 15 20252163 20255512 PCT