Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01560 ATGCTTTTCTCTTTAAGTCATTGGTGGTGTAAAGAACAAGAAGAAGTCACTGCACCTTCTAAGAAGAAAGAAGCTGTTACAGCCGCTAATTCTGGTTTCGGGAAAAAGCGTGTTGTCGACGACAACGATGCGAATGGAACTGCCTCTAAACGCTCTAAGAAGAAAGAAGTTGTTATAGCCGCTAATTCGGGAAGAATTTTCAGTGAAAAACACGGTCGTGTTATTCATAATGGCATGGTTGAATTTATTTCCAAAACTGGAAACAATCCTTTTAAGGATCCAAAGGTTTTCCATAGCTTTATGAATGATTCGATTGGACCTGAGATCAGTACCAAACAACTAAAACGGAAGGTTCGTGACTTTAAGGAGAAATTTGGAAGAGGAAAATGGAAATACGATGATAAGATAGATTTTGGACTTTTAAAGAAGATTGGCTAG 438 0.3813 MLFSLSHWWCKEQEEVTAPSKKKEAVTAANSGFGKKRVVDDNDANGTASKRSKKKEVVIAANSGRIFSEKHGRVIHNGMVEFISKTGNNPFKDPKVFHSFMNDSIGPEISTKQLKRKVRDFKEKFGRGKWKYDDKIDFGLLKKIG 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01560 145 MobiDBLite consensus disorder prediction 36 54 - -
Trre9g01560 145 Pfam Protein of unknown function, DUF573 65 128 IPR007592 GO:0006355
Trre9g01560 145 MobiDBLite consensus disorder prediction 19 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01560 Trre-Chr9 13595674 13596111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01560 21 125 GeBP Transcription Factor Family AT1G61730 31.579 8.47e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre9g01560 DUF573 8.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01560 - K09540 tpra:123884067 102.064