Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01556 ATGGTTGCTCGTGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGTCGTTGACGACACTTCTCACCAGGAAAGTAGTACAATTGGAATTAAAGGGACTGTTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTGAGATATCCACATATGGTGACATGTATAGCTTTGGGGTGCTTATGTTGGAAATGCTTACAGGAAAAAGACCCGCAGATGAAATGTTTGAAGATGGCCAAAATCTACACATGTTTGTTGAAAATTCATTTCCTAATAATCTTATACAGATTTTGGAACCACATCTTCTACCAAGAAATGAAGAAGCAACAATAGAAGATGGAAACATTAGGAGTTGCAATCCAATTGTAGAGAAGTGCTTAGTTTCACTTTTTCGGATTGGACTTGCTTGTTCAGTGGAATCCCCAAAAGATAGAATGAATATAGTTGATGTCATCAGAGAATTAAACATAATCAAAAAGGCCTATCTCGCCGGTGTTCGCACTCGTGATTAA 507 0.3886 MVARVSDFGIARLVSVVDDTSHQESSTIGIKGTVGYAPPEYGMGSEISTYGDMYSFGVLMLEMLTGKRPADEMFEDGQNLHMFVENSFPNNLIQILEPHLLPRNEEATIEDGNIRSCNPIVEKCLVSLFRIGLACSVESPKDRMNIVDVIRELNIIKKAYLAGVRTRD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01556 168 Pfam Protein tyrosine and serine/threonine kinase 2 80 IPR001245 GO:0004672|GO:0006468
Trre9g01556 168 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01556 168 Gene3D Transferase(Phosphotransferase) domain 1 1 164 - -
Trre9g01556 168 SUPERFAMILY Protein kinase-like (PK-like) 2 154 IPR011009 -
Trre9g01556 168 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01556 Trre-Chr9 13530923 13531704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01556 1 166 Receptor kinase-like Gene Family AT3G47570 39.521 3.97e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre9g01556 PK_Tyr_Ser-Thr 2.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01556 - - mtr:25486456 241.121