Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01536 ATGAGATTCCTCAACCTAAAAAATATTAATTGGTTAAATGTCTCAAAGAATCATTTGTCTGGGGATAATCCTGGGACCATTGGTGAATGTGTAAGCTTAGAATACCTTAATTTAGAAGGGAACTCCTTCAGCGGAACAATACCATCCTCGTTGTCTTCTCTCAAAGGTTTAAGATATTTAGACATTTCAAGAAATCAATTATATGGACCAATTCCAGATGTTATGCAGAATATCTCCGATTTGGAACACTTGAATGTTTCTTTTAACATGTTGGAAGGTGAGGTACCAACACACGGTGTCTTTCAAAATTCCACCCAAGTAGCAATGGTTGGAAACATTAAGCTTTGTGGAGGAATTTCAGAGTTGCATCTACCACCATGCTCCACCAATGGTAGGAAACATGCAAAAACCCATAATTTCAAGTTGATATCGGTGATAGTTATTGTGGTTTCTTTTCTTTTCATACTTTTATTTACTATAGATATCTACTGGATGAGGAAAAGAAACCGAAAATCATCTTCTGATTCACCATCAATTATTGATCAACTACTCAAGGTTTCATACCAAGACTTACATCGAGGAACCGAAGGGTTCTCGGATAGGAACCTGATCGGATCAGGAAGTTTTGGTTCTGTGTATAGAGGAAATCTTGTGCCAGAAGATAATGTTGTGGCCGTGAAGGTTCTAAACCTAAAAAAAAAGGGAGCTAACAAGAGTTTCATTGTTGAATGTAATGCACTAAAAAATATTAGACACCGAAATTTAGTTAAGCTTTTAACATGTTGTTGTAGTACAGATTACAAAAGTCAAGAATTTAAAGCTCTAATTTTTTACTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTAAGATTTTAAATGAAAAACATCCCAAAACAATGGACCTTTCTCATAGATTAAACACTATTATCGATGTTGCTTCTGCGTTACATTATCTTCATGAAGAATGTGGGCAATTGGTCCTTCATTGCGATCTAAAGCCAAACAATGTTCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGACATAGCAAGGATTGTCTCAGACATTTGCGGTACCTCTCATAAGGATAACAGTACAATTGAAATAAAAGAAAATGTTGGCTATGCTCCTCCAGGTATGTTCTAA 1161 0.3575 MRFLNLKNINWLNVSKNHLSGDNPGTIGECVSLEYLNLEGNSFSGTIPSSLSSLKGLRYLDISRNQLYGPIPDVMQNISDLEHLNVSFNMLEGEVPTHGVFQNSTQVAMVGNIKLCGGISELHLPPCSTNGRKHAKTHNFKLISVIVIVVSFLFILLFTIDIYWMRKRNRKSSSDSPSIIDQLLKVSYQDLHRGTEGFSDRNLIGSGSFGSVYRGNLVPEDNVVAVKVLNLKKKGANKSFIVECNALKNIRHRNLVKLLTCCCSTDYKSQEFKALIFYYMKNGSLEQWLHPKILNEKHPKTMDLSHRLNTIIDVASALHYLHEECGQLVLHCDLKPNNVLLDDDMVAHVSDFDIARIVSDICGTSHKDNSTIEIKENVGYAPPGMF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01536 386 SMART serkin_6 198 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01536 386 ProSiteProfiles Protein kinase domain profile. 198 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01536 386 FunFam LRR receptor-like serine/threonine-protein kinase EFR 169 279 - -
Trre9g01536 386 Gene3D Transferase(Phosphotransferase) domain 1 280 386 - -
Trre9g01536 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Trre9g01536 386 SUPERFAMILY Protein kinase-like (PK-like) 170 383 IPR011009 -
Trre9g01536 386 Pfam Leucine rich repeat 3 42 IPR001611 GO:0005515
Trre9g01536 386 ProSitePatterns Protein kinases ATP-binding region signature. 204 227 IPR017441 GO:0005524
Trre9g01536 386 Gene3D Ribonuclease Inhibitor 1 136 IPR032675 -
Trre9g01536 386 Gene3D Phosphorylase Kinase; domain 1 159 279 - -
Trre9g01536 386 Pfam Protein kinase domain 200 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01536 386 SUPERFAMILY L domain-like 3 116 - -
Trre9g01536 386 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 124 - -
Trre9g01536 386 PANTHER OS04G0122200 PROTEIN 5 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01536 Trre-Chr9 13339852 13341012 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01536 5 99 Receptor kinase-like Gene Family AT3G47570 30.000 1.83e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre9g01536 Pkinase 7.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01536 - - mtr:11405832 575.474