Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01534 ATGTCATCTCTTACTCTAATTGCTGTTGACTTGAATAAATTTAATGGCTCTCTTCCACCAAATATGTTCCATAATCTTCCGAATCTCGAAACACTTTTCATCGGTGGGAATCAAATCTCAGGTCGAATCCCGGCTTCCATCACAAATGCATCTGTCTTAAGAGCATTTGATATCACTGTAAATAAATTCATTGGTCAAGTTCCAAGTCTTGGGAAGCTAAAAGATCTTCATCTTCTAGGTTTGTCTCAGAACAATCTTGGAAGCAATTCTAGTAAAGATTTAGAGTTTGTAGAGTCATTGGAAAATTGTAGAAAAATTCCGCCAGAATTAGGAAATCTAGTTAACTTATATCTCTTAACCGTGGAAGATAACCGTTTTGAAGGGACGATTCCTGATACTTTCGCGAAGTTACAGAAGTTGCAAGTGTTAGAATTAAGTGGAAACCGTTTGTCGGGAAATATACCGGCCTTTATAGGCAACCTCAGTCAGTTGTTTTATTTGGGTTTAGGACATAATATGTTAGAAGGAAATATTCCTCCAAGTATAGGAAATTGCCAAAAGTTATATCACTTAGACCTTTCACGAAATAATCTTAGAGGAACCATATCGATAGAGGTTTTTAGTCTCTTTTCACTAACAAAATTATTAGACTTTTCGGGAAACTCATTGAGCGGTAGTCTACCGCAGGAAGTAGGCAATCTAGAATATATCGGAATGCTGAATTTCTCTGAGAATCATTTGTCTGGTGATATTCCTGGAACCATCGGAGAATGCGTAAGCTTAGAGTACCTTTATTTGCAAGGAAATTCCTTCCATGGAGTCATACCAGCCTCTTTGGCTTCATTAAAAGGTCTCCAACAATTAGACCTGTCACGAAACCGCTTGTCCGGATCAATTCCTAAGGGCATACAAAATATTTCTTTCCTACAATACTTCAATGTATCTTTTAACATGTTGGAAGGCGAGGTACCAACCGAAGGTGTCTTTCTAAATGCAACCGAGGTGGCGGTAACCGGAAACAATAACCTTTGTGGAGGTATTTCAAAACTGAATCTACCTCCATGCCCCTTAAAAGGAAAGAAACACGAAAAACATCATGATTTCAAGTTGATAGCAGTGATAGTTAGTGTGGTTTCTTTTCTTCTTATACTTCTAATTATCCTAACTATCTACTGTTTGAGGAAAAGAAACAAGACACCGTCTTTTGAGTCACCGACAATTGGCCTTATGGTTAAGATTTCGTATGAAGACTTGTACAATGGAACCGACGGATTCTCATCAAGAAACTTGATAGGATCTGGAAATTTTGGCTCTGTCTACTTAGGAAGTCTCGAGTCAGAGGATAAAGCTGTAGCCATAAAAGTTCTAAAACTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAATGCAATGCATTGAAAAATATTAGACACCGAAATTTGGTTAAGATTTTGACAAGTTGTTCAAGTACAGATTTCAAAGGTCAAGAATTCAAAGCTCTTGTTTTCGAGTACATGAAAAATGGAAACTTAGAAAGTTGGTTGCATCCATCAAAAGAAATTGTAGGTCAACAAAATACATTGAACCTTGCACAAAGGTTAAGTATTATTATTGATGTTGCTTCGGCATTTCATTACCTTCATCACGAATGCGAGCAACCTGTTATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGACTCAATGGTAGCTCATGTGAGTGATTTTGGCATCGCGAAATTGCTCCCGAGTATTGGCGTCTCCTTGATGCAAAATAGCACAGTTGGAATAAAGGGGACTATTGGTTATGCTCCTCCAGAGTATGGAATGGGATCTAAGTTGTCGATTGAAGGCGACATGTATAGCTTCGGAATTCTAGTTTTAGAAATGTTAACCGGAAGAAGACCTACCGATGAAATGTTTGAAGACAGTCATGGTCTTCACAATTTCGTTAAAATTTTGATTTCAAATGATCTTTTGCAGATTGTAGACCCAACCATTGTCCACAATGAATTGGAACGAGCTACTGACAGTGAGAATCTTGGCGTTATGGAATCTAATGCAGAGAAATGCCTATTTTCGCTTTTTAGTATTGCACTTGCTTGTTCAATGGAATCACCGAAAGAAAGAATGAGTATGGTTGAAGTCATAAGAGAGCTTAATATAATCAAAAGTTTCTTTCCTACTGAGGGTTTAATGGAAAAATCTGCATTACAAACACAAAAAGTATGA 2241 0.3739 MSSLTLIAVDLNKFNGSLPPNMFHNLPNLETLFIGGNQISGRIPASITNASVLRAFDITVNKFIGQVPSLGKLKDLHLLGLSQNNLGSNSSKDLEFVESLENCRKIPPELGNLVNLYLLTVEDNRFEGTIPDTFAKLQKLQVLELSGNRLSGNIPAFIGNLSQLFYLGLGHNMLEGNIPPSIGNCQKLYHLDLSRNNLRGTISIEVFSLFSLTKLLDFSGNSLSGSLPQEVGNLEYIGMLNFSENHLSGDIPGTIGECVSLEYLYLQGNSFHGVIPASLASLKGLQQLDLSRNRLSGSIPKGIQNISFLQYFNVSFNMLEGEVPTEGVFLNATEVAVTGNNNLCGGISKLNLPPCPLKGKKHEKHHDFKLIAVIVSVVSFLLILLIILTIYCLRKRNKTPSFESPTIGLMVKISYEDLYNGTDGFSSRNLIGSGNFGSVYLGSLESEDKAVAIKVLKLQKKGAHKSFIAECNALKNIRHRNLVKILTSCSSTDFKGQEFKALVFEYMKNGNLESWLHPSKEIVGQQNTLNLAQRLSIIIDVASAFHYLHHECEQPVIHCDLKPSNVLLDDSMVAHVSDFGIAKLLPSIGVSLMQNSTVGIKGTIGYAPPEYGMGSKLSIEGDMYSFGILVLEMLTGRRPTDEMFEDSHGLHNFVKILISNDLLQIVDPTIVHNELERATDSENLGVMESNAEKCLFSLFSIALACSMESPKERMSMVEVIRELNIIKSFFPTEGLMEKSALQTQKV 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01534 746 SUPERFAMILY Protein kinase-like (PK-like) 399 725 IPR011009 -
Trre9g01534 746 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 102 358 - -
Trre9g01534 746 Gene3D Ribonuclease Inhibitor 105 356 IPR032675 -
Trre9g01534 746 Gene3D Transferase(Phosphotransferase) domain 1 507 734 - -
Trre9g01534 746 SMART serkin_6 425 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01534 746 SUPERFAMILY L domain-like 101 345 - -
Trre9g01534 746 ProSitePatterns Protein kinases ATP-binding region signature. 431 454 IPR017441 GO:0005524
Trre9g01534 746 Pfam Protein kinase domain 427 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01534 746 SUPERFAMILY L domain-like 2 94 - -
Trre9g01534 746 Gene3D Ribonuclease Inhibitor 1 104 IPR032675 -
Trre9g01534 746 PRINTS Leucine-rich repeat signature 282 295 - -
Trre9g01534 746 PRINTS Leucine-rich repeat signature 188 201 - -
Trre9g01534 746 FunFam LRR receptor-like serine/threonine-protein kinase EFR 396 506 - -
Trre9g01534 746 SMART LRR_sd22_2 137 163 - -
Trre9g01534 746 SMART LRR_sd22_2 26 52 - -
Trre9g01534 746 SMART LRR_sd22_2 282 308 - -
Trre9g01534 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 556 568 IPR008271 GO:0004672|GO:0006468
Trre9g01534 746 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Trre9g01534 746 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Trre9g01534 746 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 507 734 - -
Trre9g01534 746 PANTHER OS04G0122200 PROTEIN 1 724 - -
Trre9g01534 746 ProSiteProfiles Protein kinase domain profile. 425 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01534 746 SMART LRR_typ_2 137 159 IPR003591 -
Trre9g01534 746 SMART LRR_typ_2 26 50 IPR003591 -
Trre9g01534 746 SMART LRR_typ_2 282 305 IPR003591 -
Trre9g01534 746 SMART LRR_typ_2 209 234 IPR003591 -
Trre9g01534 746 SMART LRR_typ_2 161 185 IPR003591 -
Trre9g01534 746 SMART LRR_typ_2 1 25 IPR003591 -
Trre9g01534 746 Gene3D Phosphorylase Kinase; domain 1 408 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01534 Trre-Chr9 13334286 13336724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01534 1 730 Receptor kinase-like Gene Family AT3G47570 45.198 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre9g01534 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01534 - - gmx:100792724 976.467