Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01466 ATGCTTCCATTTCAGTGTCGCCGCCGCCACAAATCCGACATGCCTTACCTCACCACCCTCATCGGCATTATCCTCCTCTTCTTCCCGGCGACAACCTCTCAAACACAAATCTTCAATCACACTTTCGAAACCTTCAATTCCACTAGCCTCAACTTACTCGATGTTATACCCTCCGCATCCATCAACGGAGGAGCTTTACAAGTCACCCAAGACAGCGCCGGAAGTTCAAAGATCGTCACCCTCTACAACAACTCCGGCAGAATCTTTTTCAAAACTCCCTTCAAACTCTGGGATTCCGGCTCCGACGACGGAAAAATCGCTTCCTTCAACACCTCTTTCCTCGTCAACGTATTTCGCCTCAACAACGGAGAAACTCCCGGCGAAGGTCTAGCTTTCATCATCGCTCCATCTCTCACCATTCCTCTCAACAGCTCCGGCGGTTACCTCGGTTTAACAAACGCAACAACAGACGGTAACGTAACTAACCGTTTCGTCGCCGTTGAACTTGACACCGTTAAACAAGACTTCGATATTAACAACAATCACATGGGACTCGATATTAACAGCGTTCATTCCAACGTTTCTGTTCCTCTCGATTTCGAAATCGCTCCTAACGGAACTAAGTTTTACGTTTTATGGATTGAATACGACGGTGATCGGAGAAACATTGATGTTTACATGGCGGAGCAACCTTCAAGAGATTTACCTATAGTAAAAAAACCGGTTAAACCGGTTTTAAATTCGAGTTTGGATCTAAAACAATGGGTGAACCGGGAATCTTATTTTGGGTTTTCTGCTTCAACCGGAAATAATATTGAGTTAAATTGTGTACTTAAATGGAATATTTCAATTGAGGTTTTTGATGAAAAGGGTAAAAATGGAAAAGCATTGGCTATTGGTTTAGGTGTTGGGATTCCTGTATTAATTATTTTAATTGGTGGATTAGGGTGGTATTATTATTTGATTAAGAAGAAAAAAAGAGATGAAAATTATGGTTCTAATTCTCAAATTATGGGGACATTGAAGAGTTTACCAGGAACACCAAGAGAATTTAATTATCAGGAATTGAAGAAAGCTACTAATAATTTTGATGAAAAGTTTAAACTTGGTGAAGGTGGATACGGTGTCGTTTATAGAGGAATATTGCCTAAAGAGAAATTAGAAGTTGCTGTTAAGAAATTTTCTAGAGATAAGATGAAAAGTACTGATGATTTCTTGGCTGAACTTACTATTATCAATCGTCTTCGTCATAAACATCTTGTTAGATTACAAGGATGGTGCCACAAAAATGGAGTATTGCTCTTGGTATATGACTACATGCCTAATGGAAGTTTAGACGACCACATATTTTGTGAGGAAGGAACAAGCACAACCCCGCTAAGTTGGCCTTTGAGGTACAAAATCCTTTCAGGTGTCGCTTCTGCTTTAAATTATCTCCACAACGAGTATGATCAAACAGTCGTTCACAGAGACCTTAAAGCAAGCAACATTATGCTAGACTCAGATTTCAATGCTCGTTTAGGAGATTTCGGGTTAGCACGCGCACTAGAGAATGAAAAAACATCCTATGCAGAATTAGAAGGAGTACAAGGTACAATGGGATACATAGCACCAGAATGTTTCCACACAGGAAAAGCAACAAGAGAATCAGATGTATATGGATTTGGCGCCGTGTTACTTGAAACTGTGTGTGGTCAAAGACCATGGACTAAAATCGAAGGGTACCAATTTTTGGTCGATTGGGTTTGGTATTTGCATCGCGAAGGAAGAATATTGGAAGCAGTTGATAAAAGTGTTGGCAATGAATACGATGTTGAAGAGGTCGATAGTATATTGAAACTGGGATTAATTTGTTCTCATCCGGTTGCTAGTGAGAGACCAAATTTGCAAACAATTGTTCAGATTTTATCTGGTTCAGTTAACGTGCCTTATGTGCCGCCTTTTAAGCCATCTTTTATGTGGCCCGCCGTGGATTTAGCTAGTCTTGCAAGTACTAATTTTACAGGAGGAACAACTACTAGTGAGTATACACCAATCAATAGTAACACTACACAATCTTCTTTGCGTGTTGAATTTTCAGACAATGGTTCTATGGTCTAA 2100 0.401 MLPFQCRRRHKSDMPYLTTLIGIILLFFPATTSQTQIFNHTFETFNSTSLNLLDVIPSASINGGALQVTQDSAGSSKIVTLYNNSGRIFFKTPFKLWDSGSDDGKIASFNTSFLVNVFRLNNGETPGEGLAFIIAPSLTIPLNSSGGYLGLTNATTDGNVTNRFVAVELDTVKQDFDINNNHMGLDINSVHSNVSVPLDFEIAPNGTKFYVLWIEYDGDRRNIDVYMAEQPSRDLPIVKKPVKPVLNSSLDLKQWVNRESYFGFSASTGNNIELNCVLKWNISIEVFDEKGKNGKALAIGLGVGIPVLIILIGGLGWYYYLIKKKKRDENYGSNSQIMGTLKSLPGTPREFNYQELKKATNNFDEKFKLGEGGYGVVYRGILPKEKLEVAVKKFSRDKMKSTDDFLAELTIINRLRHKHLVRLQGWCHKNGVLLLVYDYMPNGSLDDHIFCEEGTSTTPLSWPLRYKILSGVASALNYLHNEYDQTVVHRDLKASNIMLDSDFNARLGDFGLARALENEKTSYAELEGVQGTMGYIAPECFHTGKATRESDVYGFGAVLLETVCGQRPWTKIEGYQFLVDWVWYLHREGRILEAVDKSVGNEYDVEEVDSILKLGLICSHPVASERPNLQTIVQILSGSVNVPYVPPFKPSFMWPAVDLASLASTNFTGGTTTSEYTPINSNTTQSSLRVEFSDNGSMV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01466 699 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 286 IPR013320 -
Trre9g01466 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Trre9g01466 699 PANTHER - 66 647 - -
Trre9g01466 699 CDD STKc_IRAK 369 636 - -
Trre9g01466 699 ProSitePatterns Protein kinases ATP-binding region signature. 369 393 IPR017441 GO:0005524
Trre9g01466 699 CDD lectin_legume_LecRK_Arcelin_ConA 38 281 IPR001220 GO:0030246
Trre9g01466 699 Gene3D Phosphorylase Kinase; domain 1 348 439 - -
Trre9g01466 699 Pfam Legume lectin domain 40 289 IPR001220 GO:0030246
Trre9g01466 699 Gene3D Transferase(Phosphotransferase) domain 1 440 642 - -
Trre9g01466 699 Gene3D - 36 299 - -
Trre9g01466 699 ProSiteProfiles Protein kinase domain profile. 363 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01466 699 FunFam probable L-type lectin-domain containing receptor kinase S.5 440 641 - -
Trre9g01466 699 SMART serkin_6 363 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01466 699 FunFam probable L-type lectin-domain containing receptor kinase S.5 348 439 - -
Trre9g01466 699 Pfam Protein kinase domain 365 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01466 699 SUPERFAMILY Protein kinase-like (PK-like) 345 656 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01466 Trre-Chr9 12545373 12550425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01466 38 652 Receptor kinase-like Gene Family AT5G55830 38.462 3.05e-132 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre9g01466 Pkinase 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01466 - - tpra:123907446 1240.71