Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01456 ATGATGGTTATTGATAATCTTGCTGGATTGGATTCGTACCTTGATCAAGAGATGCATCTTGAAGTTCAACCTGTTGTTGTAGAGGAAACTTCAATGAATGTTGAGAATGTGTTGCATGATGTTAAAATTGGGAAGGCGGAGGAGCTAGCTGCCGAGGATGAAAATGTGAAACCAATAGTTGTTGCAGAAGATATTCCACAAGAAAATATTCAAGATTCCCTTCACTCGGTTCCGGTTGAGGTTGATGCTCAAATTTTGAATACAACTGAGGGTGAAGATGCTTCTGATGTGAAGGTGGATGCCGAAAAACTTCCTCAGAGTAATAATGGGGTTGAGAATGATGATGCTGCATGTCAAAATGGTGATGGTGACCCTGAAATGACAACGGTGGAAGTTGAGGTGAAGCCTGAAGTTTGTGAAGCGGCTGATAGTAAACCTTGTGATAATGAACCTATATCGTCAAGTCATAACAATGCTACTACACCACAACCTGACCCTTCTGATACAAATGAACCTATACCGTCAAGTCATAACGAACCTACTGCACCACAACCTGACCCTTCTGATACAAATGAACCTATACCGTCAAGTCATAACGAACCTACTGCACCACAACCTGACCCTTCCGATACAAATGAAGCTATACCGTCAAGTCATAACGAACCTACTGCAGCACAACCTCCCCCTGGCCCTGCTGATACATTGCCAGAAATCAATAATGTTTTAGAAGATGAAAGTAAGGCTGGTGAAGAGCATGCTGCTGAGCCTGCATATAATGGGATCCCGGATCCGCCGCAGAACATGTATTTCTTGGATCCTGATCATTATTATGATGGTAATGAGTCGGGAACAGAAGAGGACCAAGCCGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGAGAGAGGAGCATGGATTTCAAACCTCCCAAATTTTACGGAGAAGGACTTAATTGCCTTAAGTTATGGAGATCAGTGATGAGATTGGGAGGCTATGAAAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCACAACATAAAAGGTGGTGAGCTGAATGTGCCTATTGCTTCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGCTATAGCATCAGGTAGAGCCCGGAGATATGCTGCTGAGCAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATGCCGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAATTTACTTAAACGCAAGAAACCGTCTTATATGGATAACACAGTCAAAGCAGCACGTAGTAAACCATCAAGACCACAGTTGGAAACAGCTGTGGTTGACATTGGACCTCCAGCTGATTGGGTAAAAGTCAATGTACAGAAAACTAAAGATTGTTTCGAGATATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTTCAATCAGACCCTGCGGGACGTTTGGTCATAAGTGGTGAGCCAGAGCATCCCAATAATCCTTGGGGTGTTACACCATTCAAAAAGGTTGTGAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAGTTGTTTGTTCGTGTCCCATTTGAACAGTCAGAATAG 1740 0.4397 MMVIDNLAGLDSYLDQEMHLEVQPVVVEETSMNVENVLHDVKIGKAEELAAEDENVKPIVVAEDIPQENIQDSLHSVPVEVDAQILNTTEGEDASDVKVDAEKLPQSNNGVENDDAACQNGDGDPEMTTVEVEVKPEVCEAADSKPCDNEPISSSHNNATTPQPDPSDTNEPIPSSHNEPTAPQPDPSDTNEPIPSSHNEPTAPQPDPSDTNEAIPSSHNEPTAAQPPPGPADTLPEINNVLEDESKAGEEHAAEPAYNGIPDPPQNMYFLDPDHYYDGNESGTEEDQAAFMKELENFFRERSMDFKPPKFYGEGLNCLKLWRSVMRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPEPVNVENQAIASGRARRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNAVSVQKREKQLKSINLLKRKKPSYMDNTVKAARSKPSRPQLETAVVDIGPPADWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01456 579 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 479 579 IPR002068 -
Trre9g01456 579 ProSiteProfiles ARID domain profile. 285 376 IPR001606 GO:0003677
Trre9g01456 579 SMART ARID_2 282 372 - -
Trre9g01456 579 Gene3D - 285 382 IPR036431 GO:0003677
Trre9g01456 579 MobiDBLite consensus disorder prediction 246 265 - -
Trre9g01456 579 FunFam AT-rich interactive domain-containing protein 3 471 579 - -
Trre9g01456 579 MobiDBLite consensus disorder prediction 191 221 - -
Trre9g01456 579 CDD ACD_sHsps_p23-like 498 574 - -
Trre9g01456 579 SMART bright_3 286 377 IPR001606 GO:0003677
Trre9g01456 579 MobiDBLite consensus disorder prediction 89 127 - -
Trre9g01456 579 FunFam AT-rich interactive domain-containing protein 3 285 384 - -
Trre9g01456 579 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 103 578 IPR045147 GO:0006357
Trre9g01456 579 Pfam ARID/BRIGHT DNA binding domain 288 372 IPR001606 GO:0003677
Trre9g01456 579 Gene3D - 478 579 IPR008978 -
Trre9g01456 579 SUPERFAMILY HSP20-like chaperones 488 575 IPR008978 -
Trre9g01456 579 CDD ARID 287 372 - -
Trre9g01456 579 SUPERFAMILY ARID-like 277 386 IPR036431 GO:0003677
Trre9g01456 579 MobiDBLite consensus disorder prediction 141 237 - -
Trre9g01456 579 MobiDBLite consensus disorder prediction 148 177 - -
Trre9g01456 579 Pfam Hsp20/alpha crystallin family 496 578 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01456 Trre-Chr9 12428457 12434845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01456 269 577 ARID Transcription Factor Family AT1G76510 60.510 3.98e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre9g01456 HSP20 2.5e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01456 - - psat:127119953 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01456 9 12428457 12434845 Trre9g01456 9 12428457 12434845 ECH