Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01455 ATGAGTGATACAAAAGAAAACGAAGAAGCTGGCGAGGGTGTTCCCGCGGCTGTTAGTGTGGAGGAAGCTGGAAATGTCGTTGGTGAAAATGAAAGTTCGAACCAAACTTCAACTAGTCCACAATTAATAGATAATGATATGATGGTTATTGATAATCTTGCTGGATTGGATTCGTACCTTGATCAAGAGATGCATCTTGAAGTTCAACCTGTTGTTGTAGAGGAAACTTCAATGAATGTTGAGAATGTGTTGCATGATGTTAAAATTGGGAAGGCGGAGGAGCTAGCTGCCGAGGATGAAAATGTGAAACCAATAGTTGTTGCAGAAGATATTCCACAAGAAAATATTCAAGATTCCCTTCACTCGGTTCCGGTTGAGGTTGATGCTCAAATTTTGAATACAACTGAGGGTGAAGATGCTTCTGATGTGAAGGTGGATGCCGAAAAACTTCCTCAGAGTAATAATGGGGTTGAGAATGATGATGCTGCATGTCAAAATGGTGATGGTGACCCTGAAATGACAACGGTGGAAGTTGAGGTGAAGCCTGAAGTTTGTGAAGCGGCTGATAGTAAACCTTGTGATAATGAACCTATATCGTCAAGTCATAACAATGCTACTACACCACAACCTGACCCTTCTGATACAAATGAACCTATACCGTCAAGTCATAACGAACCTACTGCACCACAACCTGACCCTTCTGATACAAATGAACCTATACCGTCAAGTCATAACGAACCTACTGCACCACAACCTGACCCTTCCGATACAAATGAAGCTATACCGTCAAGTCATAACGAACCTACTGCAGCACAACCTCCCCCTGGCCCTGCTGATACATTGCCAGAAATCAATAATGTTTTAGAAGATGAAAGTAAGGCTGGTGAAGAGCATGCTGCTGAGCCTGCATATAATGGGATCCCGGATCCGCCGCAGAACATGTATTTCTTGGATCCTGATCATTATTATGATGGTAATGAGTCGGGAACAGAAGAGGACCAAGCCGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGAGAGAGGAGCATGGATTTCAAACCTCCCAAATTTTACGGAGAAGGACTTAATTGCCTTAAGTTATGGAGATCAGTGATGAGATTGGGAGGCTATGAAAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCACAACATAAAAGGTGGTGAGCTGAATGTGCCTATTGCTTCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGCTATAGCATCAGGTAGAGCCCGGAGATATGCTGCTGAGCAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATGCCGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAATTTACTTAAACGCAAGAAACCGTCTTATATGGATAACACAGTCAAAGCAGCACGTAGTAAACCATCAAGACCACAGTTGGAAACAGCTGTGGTTGACATTGGACCTCCAGCTGATTGGGTAAAAGTCAATGTACAGAAAACTAAAGATTGTTTCGAGATATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTTCAATCAGACCCTGCGGGACGTTTGGTCATAAGTGGTGAGCCAGAGCATCCCAATAATCCTTGGGGTGTTACACCATTCAAAAAGGTTGTGAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAGTTGTTTGTTCGTGTCCCATTTGAACAGTCAGAATAG 1878 0.4382 MSDTKENEEAGEGVPAAVSVEEAGNVVGENESSNQTSTSPQLIDNDMMVIDNLAGLDSYLDQEMHLEVQPVVVEETSMNVENVLHDVKIGKAEELAAEDENVKPIVVAEDIPQENIQDSLHSVPVEVDAQILNTTEGEDASDVKVDAEKLPQSNNGVENDDAACQNGDGDPEMTTVEVEVKPEVCEAADSKPCDNEPISSSHNNATTPQPDPSDTNEPIPSSHNEPTAPQPDPSDTNEPIPSSHNEPTAPQPDPSDTNEAIPSSHNEPTAAQPPPGPADTLPEINNVLEDESKAGEEHAAEPAYNGIPDPPQNMYFLDPDHYYDGNESGTEEDQAAFMKELENFFRERSMDFKPPKFYGEGLNCLKLWRSVMRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPEPVNVENQAIASGRARRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNAVSVQKREKQLKSINLLKRKKPSYMDNTVKAARSKPSRPQLETAVVDIGPPADWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01455 625 FunFam AT-rich interactive domain-containing protein 3 517 625 - -
Trre9g01455 625 SUPERFAMILY HSP20-like chaperones 534 621 IPR008978 -
Trre9g01455 625 Gene3D - 331 428 IPR036431 GO:0003677
Trre9g01455 625 CDD ACD_sHsps_p23-like 544 620 - -
Trre9g01455 625 Gene3D - 524 625 IPR008978 -
Trre9g01455 625 SMART bright_3 332 423 IPR001606 GO:0003677
Trre9g01455 625 CDD ARID 333 418 - -
Trre9g01455 625 MobiDBLite consensus disorder prediction 1 41 - -
Trre9g01455 625 MobiDBLite consensus disorder prediction 187 283 - -
Trre9g01455 625 Pfam Hsp20/alpha crystallin family 542 624 IPR002068 -
Trre9g01455 625 MobiDBLite consensus disorder prediction 194 223 - -
Trre9g01455 625 MobiDBLite consensus disorder prediction 135 173 - -
Trre9g01455 625 Pfam ARID/BRIGHT DNA binding domain 334 418 IPR001606 GO:0003677
Trre9g01455 625 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 525 625 IPR002068 -
Trre9g01455 625 ProSiteProfiles ARID domain profile. 331 422 IPR001606 GO:0003677
Trre9g01455 625 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 144 624 IPR045147 GO:0006357
Trre9g01455 625 MobiDBLite consensus disorder prediction 292 311 - -
Trre9g01455 625 MobiDBLite consensus disorder prediction 26 41 - -
Trre9g01455 625 SMART ARID_2 328 418 - -
Trre9g01455 625 MobiDBLite consensus disorder prediction 237 267 - -
Trre9g01455 625 FunFam AT-rich interactive domain-containing protein 3 331 430 - -
Trre9g01455 625 SUPERFAMILY ARID-like 323 432 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01455 Trre-Chr9 12428457 12434983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01455 315 623 ARID Transcription Factor Family AT1G76510 60.510 5.86e-128 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre9g01455 HSP20 2.8e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01455 - - psat:127119953 910.983