Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01438 ATGACACGAATGCTAAGAATTCTCAATTCCACGGCAAATCTCACCGCCGTAGCAGTTGTAGCACCACCACCAGAAGCCGTAGCTTTGGAATCAGATTTCGTAGTGATTCTCGCAACTTTACTCTGCGCTTTGATTTGCGTTGTCGGATTAATCGCTGTCGCTCGTTGTGCCTGGCTCCGACGAGACTCCGGCGCCGGAAATTCACCTCAACAAGCTCTAGCTAACAAAGGACTGAAAAAAAAGGTTCTTCAATCACTTCCGAAATTCGCTTACGTAGATAGCAACCCTGGAAAATGGCTAGCAACAACAGAATGCGCAATTTGCTTGGCGGATTTTGTCGCCGGCGACGAGATCCGTGTTTTACCGCAGTGTGGACATGGATTCCACGTGGCGTGCATAGACACTTGGCTTGGATCACACTCTTCTTGTCCTTCCTGTAGACAGATTCTAGCTGTAACAAGGTGTCAAAAGTGCGGCAGGTTTCCGGCGACCGGAGCTGAAACCGCCGCTACCAGCGTTCCGGTGAGTGAACCGGAGTTGAAATCTTTAGAAGAAGGCAATGTCGGTGCAAATAGTAATAATCATTGTAGTGGGGGTGTTAGTAGTAGTAATAACAGTGGGTTCTTGCCTTAA 633 0.4834 MTRMLRILNSTANLTAVAVVAPPPEAVALESDFVVILATLLCALICVVGLIAVARCAWLRRDSGAGNSPQQALANKGLKKKVLQSLPKFAYVDSNPGKWLATTECAICLADFVAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGAETAATSVPVSEPELKSLEEGNVGANSNNHCSGGVSSSNNSGFLP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01438 210 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 26 159 - -
Trre9g01438 210 SMART FANCL_C_2 101 158 - -
Trre9g01438 210 CDD RING-H2_EL5-like 104 147 - -
Trre9g01438 210 SMART ring_2 105 146 IPR001841 -
Trre9g01438 210 Pfam Ring finger domain 104 147 IPR001841 -
Trre9g01438 210 SUPERFAMILY RING/U-box 83 152 - -
Trre9g01438 210 MobiDBLite consensus disorder prediction 189 210 - -
Trre9g01438 210 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Trre9g01438 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01438 Trre-Chr9 12256251 12256883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01438 1 158 C3H Transcription Factor Family AT1G76410 63.415 2.50e-64 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01438 - - gmx:100787383 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01438 9 12256251 12256883 Trre9g01438 9 12256251 12256883 ECH
Trre9g01438 9 12256251 12256883 Trre5g04263 5 44599943 44600623 ECH
Trre9g01438 9 12256251 12256883 Trre15g02492 15 20812016 20812633 PCT