Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01422 ATGAATCTTTACGTTTCAATCTTCTTCTTCGCTGTATTCTTCATCATCTTCATCAAATTCACCTCCCAATCCCAACAACTCTCTCTTCTCCACAACGAAAACGGTTTCTCTCCTTCTTCTCTCGCTCTACCGCCGTCGCCGTCACCGTCACCGTCAGGTTCCAATTCATTGGACATAAAACCTGCTACTGCACTGGTTGCTGCCCTAGATGGTACTGTTTATTTGGTTGAAAGTTCTTCTGGGAGGATAATTTGGTCTTTTTCAACTGGATCCCCAATTTATCATTCTTCATCCAATACTCCTTCTTCTGGACTCATTGAATGTGGTGATGACTGGGAATTAATCTTTCATGATACCCATTTTGGCAAAACGAGACTCAAGGAATCTGTTGCTGATTATGTTGCTGTTACACCTATTGTGTCAAAAGATGGAGCTGTTATACTTGGATCCAAAAGGAGCACTGTTTTTGAAGTCAGTGCTAAAACTGGAAAGCTCCTTAGAAGCTATAGTGCCACTGATTTTCATAATGCTTCTACTACTGCAGTGTGGAGTGGTGACAAAGACAGTACGAATGTTACTAACGGCTTCGGTGCAAATACTAAGGAGCTTGCTGATCCAGCAGAGCTCAATATACCAGAGTTCTTGCTCCAGATAGTTAGAACTGATTATTTTTTACAATCTGTGGGTCCTGGTTCAGGAATAGTGTTGTGGACTATGTCAGTAGCTGAATTTGAGTCTGTATTATTTTGCCAGCATAATGGAAGTCCTATTTTGGGGGCTTCACTTGATGTAGAGGGTGAGTTTGCCTCTGATGTTGACAGTGGCTTGGATTTTGCTATGCCGTATCCGTGTTCAGACAGAAAACTCAGAGAAGTCTATCGCCAGCGAAAGAATTTTCTTTTTGAACCTGCTATAATTGAAAGATTATCTGATGTTGGTGCTTATCAAGAGAATGGTATGCTCCCGATGCCGAATTCAAAACTGATGCTTCCACCACAACCTAATAGTGATAAATTCCTCCCCGGTCATGGTGGTAATATGTTGCTTCCTGGGCATGGGCCAAATTCTTTGCTGCCAAAAATCAGCTTCTATGATAGTAATGATAATGCAGCTGTGCTCCCTCAGCCTCGTATGGAGATCACTGCACCTTGGGAAGTTGATCCGAGCAGGGTGATTGAATTGTCAATATCATTATTGTCTGTAGTAATATCTGTGGCATTTCTTTTGATTTTGTGCCGAAATCGATTTACAAATAGAATTACATCGAAGGTACGAATCAGTGACTCAGATTTGAAAAGCTCGCCTTCTAAGAAAAAGAGAGCGCGTAAGTCAGGAAAAAACAATGTCATTGTTGACAAACAGGGTAATAATTTGTCTTCAATTGAGGAGAATATACAAATACATAAGGAAGCAGAAAATGAAGCACAGTTACCTTATAATAAAGTTAATGGGCGCATGATTGGTAAGCTGATTCTATCAAATGAACAAATTGCGAAGGGAAGTAATGGTACCATTGTCTTTGAGGGTATATATGAAGGTCGAGCAGTTGCTGTCAAACGTCTTGTTACGGCTCATCATGATAAAGCTCATAAGGAAATCCAAAATCTCATTGCTTCTGACCGTCATCCAAATATTGTTCGATGGTATGGCATGGAATCTGATCACGATTTTGTTTACCTTGCTCTGGAGCGTTGTGCGTTCAACTTGGATGATTTGATTACTGTTTGTTCAGATATGTCAGAGAATTCAGTGTTAAGCAACAATCCAGCTTTTGAATTTTTCAAAAAGGCCCAAATAGAGACACAGAGGGATGATATACAGTGTCTTTGGAAAGCAAATGGTTATCCATCTCCTCTTTTACTAAAGCTTATGAGGGAAGTAGTTTCTGGGCTTGCTCATTTGCATGAACTAGGAATAATACATCGGGATTTGAAACCCCAAAATATTTTGATAATCAAGGAAAGATCATTATGTGCCAAGCTTTCTGATATGGGGATTAGTAAACAACTTCCTGAAGATATGTCTTCTTTAGGTCATAGTTCTACTGGTTGTGGCAGTTCGGGTTGGCAAGCGCCAGAGCAGCTTGTTCCGCAAGGACGTCAAACACGGGCTGTAGATTTGTTTAGTTTAGGTTGTGTCCTCTTTTTCTGTATGACAGCAGGAAGACATCCATTTGGAGAACGTCTTGAGCGTGATGTCAACATTGTTAAAAATAAAAAAGATCTTTTCTTAGTGGAGTTCTTTCCCGAAGCTGAGGATCTTATTTCTTCTTTATTAAACCCTGACCCCGATTTAAGGCCGAAGGCGATTGAAGTACTGCACCATCCTCTGTTTTGGAGTTCTGAGATGAAACTTTCATTTCTTCGTGACGTTAGTGATAGGGTGGAACTTGAAGATAGAGAGGCGAATTCTGTTCTTTTGAATGTATTAGAGAGCACTGCTCCAGTGGCCTTAGGTGGAAAATGGGACGAAAAAATGGAACCAACTTTCCTTGCCAACATTGGTCGTTACAGACGATATAAATTTGACAGCGTCCGAGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCATTATAGGGAATTGCCTCTAGAAATTCAGGAACTGATAGGACTTGTTCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTTCCAAGGCTCTTGATTGAAGTTTACAAAGTTATCTGCAACTATTGCAAAGATGATGAATGTTTTCAAAGATATTTTAGAGACATTGATTAA 2745 0.4022 MNLYVSIFFFAVFFIIFIKFTSQSQQLSLLHNENGFSPSSLALPPSPSPSPSGSNSLDIKPATALVAALDGTVYLVESSSGRIIWSFSTGSPIYHSSSNTPSSGLIECGDDWELIFHDTHFGKTRLKESVADYVAVTPIVSKDGAVILGSKRSTVFEVSAKTGKLLRSYSATDFHNASTTAVWSGDKDSTNVTNGFGANTKELADPAELNIPEFLLQIVRTDYFLQSVGPGSGIVLWTMSVAEFESVLFCQHNGSPILGASLDVEGEFASDVDSGLDFAMPYPCSDRKLREVYRQRKNFLFEPAIIERLSDVGAYQENGMLPMPNSKLMLPPQPNSDKFLPGHGGNMLLPGHGPNSLLPKISFYDSNDNAAVLPQPRMEITAPWEVDPSRVIELSISLLSVVISVAFLLILCRNRFTNRITSKVRISDSDLKSSPSKKKRARKSGKNNVIVDKQGNNLSSIEENIQIHKEAENEAQLPYNKVNGRMIGKLILSNEQIAKGSNGTIVFEGIYEGRAVAVKRLVTAHHDKAHKEIQNLIASDRHPNIVRWYGMESDHDFVYLALERCAFNLDDLITVCSDMSENSVLSNNPAFEFFKKAQIETQRDDIQCLWKANGYPSPLLLKLMREVVSGLAHLHELGIIHRDLKPQNILIIKERSLCAKLSDMGISKQLPEDMSSLGHSSTGCGSSGWQAPEQLVPQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNKKDLFLVEFFPEAEDLISSLLNPDPDLRPKAIEVLHHPLFWSSEMKLSFLRDVSDRVELEDREANSVLLNVLESTAPVALGGKWDEKMEPTFLANIGRYRRYKFDSVRDLLRVMRNKLNHYRELPLEIQELIGLVPEGFNDYFASRFPRLLIEVYKVICNYCKDDECFQRYFRDID 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01422 914 SMART ire1_9 57 88 IPR018391 -
Trre9g01422 914 SMART ire1_9 138 170 IPR018391 -
Trre9g01422 914 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 782 914 - -
Trre9g01422 914 PANTHER IRE1-RELATED 127 912 IPR045133 GO:0004521|GO:0004674|GO:0030968
Trre9g01422 914 SMART PGNneu 843 897 - -
Trre9g01422 914 Pfam Ribonuclease 2-5A 784 910 IPR010513 GO:0004540|GO:0006397
Trre9g01422 914 Gene3D Phosphorylase Kinase; domain 1 479 563 - -
Trre9g01422 914 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 601 780 - -
Trre9g01422 914 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Trre9g01422 914 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 483 563 - -
Trre9g01422 914 Gene3D Transferase(Phosphotransferase) domain 1 607 780 - -
Trre9g01422 914 MobiDBLite consensus disorder prediction 427 453 - -
Trre9g01422 914 Gene3D - 53 265 IPR015943 GO:0005515
Trre9g01422 914 SMART serkin_6 491 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01422 914 Pfam Protein kinase domain 495 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01422 914 SUPERFAMILY Protein kinase-like (PK-like) 495 798 IPR011009 -
Trre9g01422 914 ProSiteProfiles KEN domain profile. 781 912 IPR010513 GO:0004540|GO:0006397
Trre9g01422 914 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 56 201 IPR011047 -
Trre9g01422 914 Gene3D KEN domain 781 913 IPR038357 -
Trre9g01422 914 CDD RNase_Ire1 782 910 - -
Trre9g01422 914 ProSiteProfiles Protein kinase domain profile. 491 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01422 Trre-Chr9 12154430 12160331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01422 517 777 MAP Kinase Kinase Kinase AT3G06030 27.925 2.63e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre9g01422 Pkinase 1.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01422 K08852 - gmx:102661527 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01422 9 12154430 12160331 Trre9g01422 9 12154430 12160331 ECH
Trre9g01422 9 12154430 12160331 Trre15g02501 15 20922418 20930171 PCT