Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01420 ATGGTTAAAGTTTGGTTATTGGCTCTAATGATTCTCTACAATGGATTCTTCTCTTCAACTGTCGATGGCATTCATAATTCAACAAGGCCTAATTTTGTAAATATTGGAGCTCTTTTCTCTTTCAATACTAGTGTTGGTAGGATTATAAAAATCGCTTTAGATGCTGCGGTCGAAGATGTAAATTCCGATCCAAATATTCTCGGCGACACCAAGTTAAGACTCTCTCTTCAAGAAGATTCTAAATATAGAGGCTTTCTTAGCATTGCTGAGGTTTTGCAGCTCATGGCTAGAGACACTGTGGCAATAATTGGTCCTCACAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTTATCTCATTTTCAGCTTTGGACCCTACTCTTTCTTCACTTCAATTCCCATTTTTTATCAGAACTTGCCACAGTGATCTTTTTCAAATGTCTGCAATAGCAGACCTTGTCGACTACTACGGATGGAAAGAAGTCATTGCCGTATACATTGATGATGATAATGGGAGGAATGGAATCAGTGCATTAGGCGATAAGCTTGCCGAGAAGCGTTGCAGGATCTCGTATAAAGCGCCTGTGAGCCCCGAAGCAACTCCGGAGGAGATAACAAATGTGCTAGTTCAAGTGGCTCTTGCTGAATCAAGAGTTATAGTTGTTCATGCCAACACTCTTTGGGGACCGAAAGTGTTTACTGTCGCAAAGAATCTTGGAATGATGGGAACTGGTTATGTATGGATAGCCACTGCTTTTCTTTCTGCTATTCTTGATATAAGCAGTCCTCTATCTTCTGATAGAATGGATGAAATCCAAGGAGTGTTGACACCGCGCGTGTACACGCCGGATTCGGAGCTTAAAAGAAAGTTTGTTTCTAAATGGAAAAACTTGACTCATGGAAATACTGCCAATGGCCCTCTTGGACTCAGTTTTTTGTCTCTCTATGCATATGATACTATCTATGCTCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACAAAATCACATTCTCAAATGACTCAAAGTTATCTACACTAAAAGGAGACAACTTGCATCTTGATGCATTGAACGTTTTCGATGAAGGAAACTCGTTACGTAGAAATATTTACGAGGTTAACATGACAGGTGTGACAGGTTTGTTCAAGTATGCACCTGATAAAAACCTTGTTAATCCTGCATATGAAATCATGAATGTGGTTGGAACCGGGACTCGAAGGATTGGTTATTGGTCTAATCACTCTGGATTATCAGTCATTCCTCCAGAAAAACTTCTTTCCAAACCAGGTAATGATTTTAGGGAAAGTAAAAAGTTATACCCTGTGATTTGGCCGGGAGACAATGCTCAGAAGCCTCGCGGTTGGGTTTTTCCTAACAATGGAAGGCTATTAAGAATCGGAGTACCAATAGGCGTTAGTTACCGCCAATTTGTGTCACAAGTACCAGGCACCGATACATTTCAAGGATTCTGCATTGATGTGTTTCTTTCTGCAGTTAACCTTTTGCCTTATGCTGTTCCCTATAAGTTTATTCCATATGGGGATGGTAAGAACAATCCTAGTAACAGCGAGCTTGTCCGTCGTATAACAACCGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAAAATGGTGGACTTTACTCAGCCATTTATCGAGTCTGGTTTAGTGGTAGTAGCACCTGTTAAGGAGACAGATACAAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGGATGTGGTTTGTCACAGCTGTATTTTTCATAATAGTTGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCAAGAAAACAAGTGATTACTATCTTTTGGTTTAGCTTTTCAACAATGTTCTTCTCACATAGGGAAAATACAGTGAGCACGCCTGGTCGTTGTGTGCTACTTATATGGTTATTTGTAGTTCTTATAATCACTTCAAGTTACACAGCAAGTCTAACATCAATCCTCACAGTACAACAACTTTCTTCACCCATTAAAGGCATCGAGAGTTTAGTAATCGGCAAAGAACCAATTGGAATCGCTCAAGGTTCATTTTCTAAAGGTTATTTAATTCAAGAAATTGGTATTGATGAGTCTAGGCTTGTTCCTTTAGTAACACAAGAACAAGTTGCTAGAGCACTGAAAAAGGGTCCTCAAGATGGTGGTATTGCAGCTTATATCGATCAACGTGCCTATATCGATATCTTCCTTTCAAGCCGCTGTCAATTTACTGTTGTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTCGCCTTTCCGAGAGACTCACCATTAGCAATAGACCTATCAACTGCCATTTTACAAATGGTAGACAATGGAGACTTACAAAGGATTCATGACAAATGGCTTTTGAGTCGAGCTTGTTTATCACAAGGTGCAAAGCTTGAAGTCGAAAGACTCAAATTAAAAAGCTTTTGGGGCCTCTATGTGATATGCGGATCAGCTTGTTTGCTTGCTTTATTCATTTATGTAATACAGATAATTAGACAGTATATCAAGCACCGAGCCGAGGAACCAGATTCTCCTGACCAAAACCCGAGCTCAGGATCTTCACGTTTGAGGAGTTTTCTTTCCTTTGCAGATGAAAAAGAAGAGACTGTTAAGAGCCGTTTGAAGAGAAAGAAAATGGAGAGAATCTCTTATAGAAGTAGTGAGGGAGGATCATCTTCTATCATCTCCAATAAAGATTTTGTTGCTCAGCCATCTCCATGCATAGCTGATTCTGTTTCTAATAGTGGAAGTGAAAAAGTATTCATCAAAGTGGTGTAA 2859 0.3987 MVKVWLLALMILYNGFFSSTVDGIHNSTRPNFVNIGALFSFNTSVGRIIKIALDAAVEDVNSDPNILGDTKLRLSLQEDSKYRGFLSIAEVLQLMARDTVAIIGPHSSVTAHVITHIANELQVPLISFSALDPTLSSLQFPFFIRTCHSDLFQMSAIADLVDYYGWKEVIAVYIDDDNGRNGISALGDKLAEKRCRISYKAPVSPEATPEEITNVLVQVALAESRVIVVHANTLWGPKVFTVAKNLGMMGTGYVWIATAFLSAILDISSPLSSDRMDEIQGVLTPRVYTPDSELKRKFVSKWKNLTHGNTANGPLGLSFLSLYAYDTIYALAHALDAFFKQGNKITFSNDSKLSTLKGDNLHLDALNVFDEGNSLRRNIYEVNMTGVTGLFKYAPDKNLVNPAYEIMNVVGTGTRRIGYWSNHSGLSVIPPEKLLSKPGNDFRESKKLYPVIWPGDNAQKPRGWVFPNNGRLLRIGVPIGVSYRQFVSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSNSELVRRITTGEFDGAVGDIAITTERTKMVDFTQPFIESGLVVVAPVKETDTSALAFLAPFTPRMWFVTAVFFIIVGTVVWILEHRVNDEFRGPPRKQVITIFWFSFSTMFFSHRENTVSTPGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVIGKEPIGIAQGSFSKGYLIQEIGIDESRLVPLVTQEQVARALKKGPQDGGIAAYIDQRAYIDIFLSSRCQFTVVGQEFTRNGWGFAFPRDSPLAIDLSTAILQMVDNGDLQRIHDKWLLSRACLSQGAKLEVERLKLKSFWGLYVICGSACLLALFIYVIQIIRQYIKHRAEEPDSPDQNPSSGSSRLRSFLSFADEKEETVKSRLKRKKMERISYRSSEGGSSSIISNKDFVAQPSPCIADSVSNSGSEKVFIKVV 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01420 952 CDD PBP1_GABAb_receptor_plant 34 430 IPR044440 -
Trre9g01420 952 Pfam Bacterial extracellular solute-binding proteins, family 3 484 813 IPR001638 -
Trre9g01420 952 Gene3D - 708 816 - -
Trre9g01420 952 SUPERFAMILY Periplasmic binding protein-like II 450 815 - -
Trre9g01420 952 Gene3D - 468 584 - -
Trre9g01420 952 FunFam Glutamate receptor 468 584 - -
Trre9g01420 952 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 878 IPR015683 -
Trre9g01420 952 FunFam Glutamate receptor 149 306 - -
Trre9g01420 952 Gene3D - 149 426 - -
Trre9g01420 952 SUPERFAMILY Periplasmic binding protein-like I 28 465 IPR028082 -
Trre9g01420 952 Pfam Receptor family ligand binding region 51 411 IPR001828 -
Trre9g01420 952 FunFam Glutamate receptor 710 817 - -
Trre9g01420 952 CDD GluR_Plant 473 813 - -
Trre9g01420 952 Gene3D - 51 401 - -
Trre9g01420 952 Gene3D - 585 707 - -
Trre9g01420 952 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Trre9g01420 952 FunFam Glutamate receptor 584 714 - -
Trre9g01420 952 PIRSF IGluLR_plant 1 937 IPR017103 -
Trre9g01420 952 Pfam Ligand-gated ion channel 814 845 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01420 Trre-Chr9 12138723 12142230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01420 5 914 Ion Channels AT3G51480 58.397 0.0 1116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01420 K05387 - gmx:100785258 1489.94