Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01418 ATGGAATTGTCGTCGAAGGTAGTAGCTAGATTAAGTGGTGAGTGTTTCATGGAAGATCAAAATGATGATACCTTGGGGAATTTGAATCAGAATATTGTTGGCAAACCTCCAAGGGATCATTCTGTTGCTATGCGTCATTGTACCAGCTCTTCATGGTTGGCTGATTCGGAATCAAATATTAATGTTATTGGCCTTAAATCAAACACAGAAGATAAATCAGAGTTTCCACTTATATTGAGATCTGGAAGCAGTTCTGAGAAAGGACCAAAGCAATTCATGGAGGATGAATTTATATGTGTTGATATTCTTCGCGAATCTGTTCCTCAACAACCTGACCTTCCATCTCCATCAGCATTTTATGGGGTATTTGATGGACATGGTGGTGTTGATGCAGCATCATTTATCAAAAAAACCCTCCTTAACTTTATAATTGAAGATTCTCAATTTCCATCTAGCATTAAGAAAGCAGTTAAGAGTGCATTTGTGAAAGCTGATCATGCATTTAGAGATGCCAGTTCTCTTGATAACTCTTCAGGAACCACAGCTCTAATAGCCCTTGTCTTGGGAAGGGCCATGCTGATTGCGAATGCCGGAGATTCGCGTGCGGTACTAGGAAAACGGGGACGAGCAATTGAACTATCTAAAGACCATAAACCAAATTGCACATCTGAGAGATTAAGAATTGAAAAACTAGGTGGTGTTATCTATGACGGATACCTAAATGGACAACTATCCGTGGCGCGTGCACTAGGAGATTGGCACATAAAAGGCACAAAAGGTTCAAAAAGTCCTTTAAGTTGTGAGCCAGAGTTAGAGGAAATTGTTCTAACAGAAGAAGATGAGTTTTTGATAATGGGGTGTGATGGATTATGGGATGTTATGAGTAGTCAATGTGCTGTTACAATGGTTAGAAGGGAACTTATGCAGCATAATGATCCTAACATATGTGCTAAGGTACTTGTAACTGAGGCACTTCAAAGAAACACTTGTGATAATTTAACAGTTGTTGTGGTTTGTTTCTCTAAAGATCCACCTCCTAAGATTGAAATTCCTAGATCACATAGGAGAAGGAGTATTTCTGCTGAAGGTCTTGACCTACTCAAAGGTGTCTTGAATGGTAGATGA 1125 0.3938 MELSSKVVARLSGECFMEDQNDDTLGNLNQNIVGKPPRDHSVAMRHCTSSSWLADSESNINVIGLKSNTEDKSEFPLILRSGSSSEKGPKQFMEDEFICVDILRESVPQQPDLPSPSAFYGVFDGHGGVDAASFIKKTLLNFIIEDSQFPSSIKKAVKSAFVKADHAFRDASSLDNSSGTTALIALVLGRAMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGTKGSKSPLSCEPELEEIVLTEEDEFLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPNICAKVLVTEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLDLLKGVLNGR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01418 374 PANTHER PROTEIN PHOSPHATASE 2C 68 338 IPR015655 GO:0004722|GO:0006470
Trre9g01418 374 CDD PP2Cc 80 340 IPR001932 -
Trre9g01418 374 FunFam Probable protein phosphatase 2C 22 65 343 - -
Trre9g01418 374 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169
Trre9g01418 374 Gene3D - 64 344 IPR036457 -
Trre9g01418 374 SMART PP2C_4 70 338 IPR001932 -
Trre9g01418 374 ProSiteProfiles PPM-type phosphatase domain profile. 80 340 IPR001932 -
Trre9g01418 374 Pfam Protein phosphatase 2C 81 332 IPR001932 -
Trre9g01418 374 SUPERFAMILY PP2C-like 74 341 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01418 Trre-Chr9 12130080 12132031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01418 63 372 PP2C-type Phosphatase Gene Family AT3G51470 78.387 2.52e-178 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01418 K14803 - gmx:100786416 595.504