Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01409 ATGTCTTGTTCTTCTTCATCTGGATCGGAGGAAGATGATGAGGGCTTTGAGTCCTATCGGAAAGGTGGTTACCATGCTGTTAGAGTCGCCGATCATTTCTCCGGTGGAAGATATATAGCTCAGAGGAAACTTGGTTGGGGTCAATTTTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTTCATATGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTTGTTCAGGCTGCTCTTCACGAGATAGATGTTCTTTCATCTATTGCTGATGGCGACCCATCAAATTCAAAGTTCGTTGTCCAATTGATTGATCACTTTAAGCACACAGGTCCAAATGGACAGCACCAATGCATGGTCCTTGAATTCCTTGGTGATAGCTTGCTTCGTTTGATCAGATATAACCATTACAAAGGTCTTCCGTTGAATAAAGTTAGAGAGATCTGCAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATTATCCACACTGACTTAAAACCTGAAAACATTCTTCTACTTTCAACTATTGATCAATCCAAAGACCCTTTTAGATCCGGAGGCTCCCCAATTTTAGAACGACCTGAGGGAAACACAAACGGTGGAATTACGAGTCTTATTGAGAAAAGGTTGAAGAGGAGAGCAAGGAGTGCAGTTGCTAAAATATCAGGTAGAACATCTTCAATTGAAGGACGAGGAGAAGCTGCAAAGTCTAGTAGAAATATCAACGGGATTGACATGAGATGCAAGATTGTTGATTTTGGAAATGCATGTTGGGCTGATAAGAAGTTCGCAGAAGAAATACAGACGAGACAGTATAGAGCCCCTGAAGTTATACTGAAGTCCAGTTATTCCTTCTCCGTTGACATGTGGTCTTTTGCTAGCATTGTTTTTGAACTTGCCACCGGAGATATGTTATTTACACCGAAAGGTGGACAAGGTTTTAGCGAGGATGAGGATCATCTTGCCCTGATGATGGAACTCCTAGGAAAGATGCCCCGGAAGATTGCTACTTCTGGAGCTGTGTCCAAAGATTACTTTGACAGGCATGGTGATCTAAAAAGGATTAGAAGGCTAAAATATTTGCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCATGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCCACTGCACGACAGTGCCTGCAACACCCCTGGCTGAACTGCAAGGAATCAACAACACCAAATGAAATGATAAATGAATCCACTTTGGAAAAGGTTAATGTTGGTATGAGCAACCTTAAAATCAAGGTAGGAAAGTGA 1341 0.4124 MSCSSSSGSEEDDEGFESYRKGGYHAVRVADHFSGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAALHEIDVLSSIADGDPSNSKFVVQLIDHFKHTGPNGQHQCMVLEFLGDSLLRLIRYNHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLLSTIDQSKDPFRSGGSPILERPEGNTNGGITSLIEKRLKRRARSAVAKISGRTSSIEGRGEAAKSSRNINGIDMRCKIVDFGNACWADKKFAEEIQTRQYRAPEVILKSSYSFSVDMWSFASIVFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIATSGAVSKDYFDRHGDLKRIRRLKYLPLDKLLIDRYKFSANDAHEFSEFLLPLFDFAPEKRPTARQCLQHPWLNCKESTTPNEMINESTLEKVNVGMSNLKIKVGK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01409 446 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 204 - -
Trre9g01409 446 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Trre9g01409 446 CDD STKc_SRPK 27 413 - -
Trre9g01409 446 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01409 446 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01409 446 FunFam Protein kinase superfamily protein 24 123 - -
Trre9g01409 446 SUPERFAMILY Protein kinase-like (PK-like) 33 415 IPR011009 -
Trre9g01409 446 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Trre9g01409 446 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Trre9g01409 446 FunFam Serine/threonine-protein kinase SRPK 115 413 - -
Trre9g01409 446 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01409 446 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01409 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01409 Trre-Chr9 12029217 12032559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01409 4 414 EF-hand Containing Proteins AT5G22840 50.972 1.94e-165 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trre9g01409 Pkinase 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01409 K08832 - gmx:100784192 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01409 9 12029217 12032559 Trre9g01409 9 12029217 12032559 ECH
Trre9g01409 9 12029217 12032559 Trre15g02505 15 20944346 20948210 PCT