Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01407 ATGGCTAAGAAAGTCCATGCTCACAAGAGACATCATCATGTTGATTCTGAAACTCCTCGAAATAGTCTAGATCTGCAAGAACAAACATCTCAGAAGTACGGTCCACAAGGAGAATTACCGCACTATTATCAAGTAGAAGAAGACTGGTCTGAAAATAATCGATCTTCAAACGAGGGTTCTATGAAAAAGCTGATTAATGAAGAGCTATCGACACGATCAAGCACCAGGCAAAATGCACCAAGCATTGTGGCAAGGTTGATGGGGATAGATATGATGCCGGTAGACACTAAATATGTCGCTCCATCAGATAAAAGAATAAATGAAAATATCGGGAAGAAGTTTTCAAACAAGGGAACAAATGAAAGAAGTTCAGTTAGTTTGGAATGTTCCAACTTTGATTCTTCTAGCCATGTTGAATTTGATTCATTTCACAAAGTCGTAGAGGATGACAATGATGATGGATGGGGACGGAGTTTTGGAAAACCAATGCGACGAGAACATCCACAGGAAAAAGAACTGCAGAAATTCAAGAAAGAGTTTGAAGCATATCAAGCAGCAAGGTTTCAGGAATGTTCAAAGTTCGCTGAAATCGGAAGTGTATCTAATCGATTGATTTTTCAAGAGAATCTGAACAAGGAAAAGGTTGCAGTTGCAGCGCATAATACAAGTATGCAAAGAAAAGTTTTTCCTTCAAAGAGCAGAACTCTAAGTAGAGACTTTGAAGATTCCTTAATGCTGAAATCTTATAACAGATTAGACACATCTTCTCCAACCCGAATAGTTATCTTGAAGCCTGGTCCTGATAGCATCTTTAATCATGAAGAGAATTGGACCAATTCATCAGGAACTTTACAAGGGAGACATAGTATAGAAGATTTTCTCGAGGAGGTGAAAGAGCGGTTGAAATGTGAACTCCAAGGAAAAACTGTCGGAAAAGGTTTTGCGGTCCGAGGAAGTGAAATTGAGATACTACGCAATAAAAAACCATCGGATCCTAAACTTATCGCTCGTCAAATAGTAAAGCAAGTCAAAGAAAATGTGACTAGAGATTCCGACTCAAATTCTGTCGGCTCAGAATCAACAAGATCATACAATGGTGAAGTGCAGTTCAATGGACCAAGTTTCAATGGATATATCAGTAGAGATTCAAGGAGTTACTTGCCAGAGAAGCTAACAAATGTTGTAAAAAGTGAAAGACATGATGATTCTGAGGGAAACTCAAGATCAAATGCCTTCGAGAATCACAGAGTTAGACTCAAGAAGACAGAAGATGTTTTGAAAAGTGCACATGATTGGGAAATATCGAAAGAAGAAACAGAAATACAAACGGGATCTTTCAGGCATGAACAAGAAAACAACATATTTTTCCATAGGGAGTTATGGTCTCCGAGGAACCTCGTAAGATCCTTTTCTGCTCCTGTATCAAGATCAGGAACATCATTTGGAAAGCTTCTTCTAGAGGACCGACACATTTTAACCGGTGCTCATATTCGGAGGAAGCTTGAAGCTGTTGAAACTATGTCTGTTGATGTTAAAAAACAGAAAAAAGAGAGATTCAATAATATTAAAGAAAAGGTCTCAAATTTTAGATACAGTTTTGCTCTAAGAGGGAGAATTTTTGGCAAGAGGAATCAATCAATGGTAGAATCACATGGCAATGAATACCGTCCAACAATGAGAGATATCACAAGTGGTCCGACAGTTCTTATGAACTGCGGCGGCGAGAGACATGAGAACTACACTGAGGTACCTCCTAGTCCTGCATCTGTGTGCAGCAGTGTTCATGAAGACTTTTGGAAGCGAGCCGAATATATAAGTCCAATATCAACTCCTGATTTGTCGTCAAGAGATGATACCGTTATGCCACAAGTTTTCAGAGACATCAGCTCTGGTTTAAATGAGCTAAGAAGACAACTGAATCAACTCGATTCTGATGATGTTGAGGACTTCGCTATGAAACAAGAACCTTCTGAGTCTGAATTTGTGCAATTAATTGATCCTGCAGAATCTTACATAAGAGATTTACTTGTTGCTTCTGGTCTATACTTTGGTTCTTGGGATAAACCTTTGTTAAGAGGCGACACATATGCAAAGCCTATCGGAAATTCTGTTTTTGAAGAAGTGGAAGAATCTCATAAGAAATTGATCAAGGAGAATGATGAAAATTTTATCAAGAATCATAAGCTAGACCACAGGATTTTGCTTGATTTGTTAAACGAGTCGCTTTCAATTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAGGAAAAAATCATGCAACTCTTCAATGTTAGCGCCGCCTCAAGGAAAGGAACTATTGAAATTAGTATGGGACAATATCCGCGTTTCATTGTATCCTTCATCTGATATATCTCATTATTCACTTGATACTTTGGTGTCTCAACACTTGAGTTCAATACCTTGGTCCGGCAAAATCAACGATGAGATCAATATATTGGAAAGAGAGATAGAATGCCGTATAACTAATGATCTTATCGAAGAACTCACAAAGGATTTGCTCTGA 2526 0.384 MAKKVHAHKRHHHVDSETPRNSLDLQEQTSQKYGPQGELPHYYQVEEDWSENNRSSNEGSMKKLINEELSTRSSTRQNAPSIVARLMGIDMMPVDTKYVAPSDKRINENIGKKFSNKGTNERSSVSLECSNFDSSSHVEFDSFHKVVEDDNDDGWGRSFGKPMRREHPQEKELQKFKKEFEAYQAARFQECSKFAEIGSVSNRLIFQENLNKEKVAVAAHNTSMQRKVFPSKSRTLSRDFEDSLMLKSYNRLDTSSPTRIVILKPGPDSIFNHEENWTNSSGTLQGRHSIEDFLEEVKERLKCELQGKTVGKGFAVRGSEIEILRNKKPSDPKLIARQIVKQVKENVTRDSDSNSVGSESTRSYNGEVQFNGPSFNGYISRDSRSYLPEKLTNVVKSERHDDSEGNSRSNAFENHRVRLKKTEDVLKSAHDWEISKEETEIQTGSFRHEQENNIFFHRELWSPRNLVRSFSAPVSRSGTSFGKLLLEDRHILTGAHIRRKLEAVETMSVDVKKQKKERFNNIKEKVSNFRYSFALRGRIFGKRNQSMVESHGNEYRPTMRDITSGPTVLMNCGGERHENYTEVPPSPASVCSSVHEDFWKRAEYISPISTPDLSSRDDTVMPQVFRDISSGLNELRRQLNQLDSDDVEDFAMKQEPSESEFVQLIDPAESYIRDLLVASGLYFGSWDKPLLRGDTYAKPIGNSVFEEVEESHKKLIKENDENFIKNHKLDHRILLDLLNESLSIVLGPPLTLSRFRKKSCNSSMLAPPQGKELLKLVWDNIRVSLYPSSDISHYSLDTLVSQHLSSIPWSGKINDEINILEREIECRITNDLIEELTKDLL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01407 841 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 840 - -
Trre9g01407 841 MobiDBLite consensus disorder prediction 21 35 - -
Trre9g01407 841 MobiDBLite consensus disorder prediction 345 367 - -
Trre9g01407 841 MobiDBLite consensus disorder prediction 1 41 - -
Trre9g01407 841 MobiDBLite consensus disorder prediction 396 415 - -
Trre9g01407 841 Pfam Domain of unknown function (DUF4378) 670 835 IPR025486 -
Trre9g01407 841 Pfam DUF761-associated sequence motif 77 93 IPR032795 -
Trre9g01407 841 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01407 Trre-Chr9 12007727 12010923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01407 61 840 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 40.368 3.35e-148 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01407 - - gmx:100789616 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01407 9 12007727 12010923 Trre9g01407 9 12007727 12010923 ECH