Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01398 ATGAACAGTTTAACCAACACGGGCACAAACAAGACAACTACATGCTACGTCAACAATTTACCAGAAGATGTTGGCCAGAGAGAAGTGGAGAGGATGTTTGAAAGGTGGGGGAAAGTGGTAGATGTGTATATTGCTAAAAAAAGAAATAAGATGGGAAAGTTCTTTGGTTTTGTTAGATATGCAAATGTAAAAGATGAGAAATGGCTGGAGAATCAACTCAGGGACATATGGCTTGGATCATATAAGGTGTGGGTCAATAATTCCAAATTTGAGAGGCCTTTTAAGAAGCATCAGCATGGGGGTATCAACAAAGAAGCTGGTGGATCAGAATACAGAAGTAAGGAGCGAACCAACAGCAACAACAACAACAACAACACCAAAAACGCGAAGAACAATGCAAGGAGAGGTCATAAGGCTAGAAGGGAAGGAAAGTCTTATGCAGAGGCAATCCAAATTAAAACAGTTCAGAAGAAAGAAGCAACTCGGTATGTGGAGAGAGAGGTTTGTAGCACTAAGGAGGGTACAGAGATATCAATTGTGATCAAAGAAGATGAGATGATGTGGGCAAAGCAGGGTTTTGTTGGAATTGTTAGGAATATTGAGGAAATAGAGTCACTGCAACAACGTATAGTTGATGAAGGAATCATGACCGTTAGAGTCATTCCGATGGGAGGTGAAAAAGTCTTCTTAAAAGTGGATGAGAACGAAGATTTCTCTACTCTAGTGAAGGAAGAAGAGGATTTTTTTCAGCAAATCTTTTCTACAGTAAGGGAATGGGAACCAAGAGATGCTGGAGGTGCAAGATGA 807 0.404 MNSLTNTGTNKTTTCYVNNLPEDVGQREVERMFERWGKVVDVYIAKKRNKMGKFFGFVRYANVKDEKWLENQLRDIWLGSYKVWVNNSKFERPFKKHQHGGINKEAGGSEYRSKERTNSNNNNNNTKNAKNNARRGHKARREGKSYAEAIQIKTVQKKEATRYVEREVCSTKEGTEISIVIKEDEMMWAKQGFVGIVRNIEEIESLQQRIVDEGIMTVRVIPMGGEKVFLKVDENEDFSTLVKEEEDFFQQIFSTVREWEPRDAGGAR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01398 268 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 12 156 - -
Trre9g01398 268 MobiDBLite consensus disorder prediction 95 143 - -
Trre9g01398 268 MobiDBLite consensus disorder prediction 113 130 - -
Trre9g01398 268 SMART rrm1_1 14 86 IPR000504 GO:0003723
Trre9g01398 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 90 IPR000504 GO:0003723
Trre9g01398 268 CDD RRM_SF 16 65 - -
Trre9g01398 268 MobiDBLite consensus disorder prediction 95 112 - -
Trre9g01398 268 Gene3D - 3 148 IPR012677 -
Trre9g01398 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 65 IPR000504 GO:0003723
Trre9g01398 268 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01398 Trre-Chr9 11975845 11976651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01398 6 89 Eukaryotic Initiation Factors Gene Family AT1G22760 25.000 4.76e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01398 - K12891 ccaj:109803325 104.375