Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g01394 | ATGACGAAAACTGCTTCCGATGCCAAACCCGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAGCTGGAACTAAGCAATCGAAGAAAGCTAGCAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTGTTCATGTCTGAATTCAGAGAGACATTCAAGAAGGCGAATCCTAACAACAAATCCGTCGCTGTGGTCGGGAAAGCTGGTGGTAAAGAGTGGAAGGCAATGTCTGCTGCGGACAAGGCTCCGTATATTGCCACAGCTGAGAAGAAGAAGGAAGAGTATGAGAAGGCGATTCGTGCCTACAACCTTGGCTTGTCTGAGGGGAAAAATCCTTCTGAGGAAGAAGGATCTGACAAGTCAAAGTCAGAAGTCAATGATGAGGATGACGATGATGATGACGAGGATGATGAGTAG | 426 | 0.4836 | MTKTASDAKPADNRLKRKGAGAGTKQSKKASKDPNKPKRPPSAFFVFMSEFRETFKKANPNNKSVAVVGKAGGKEWKAMSAADKAPYIATAEKKKEEYEKAIRAYNLGLSEGKNPSEEEGSDKSKSEVNDEDDDDDDEDDE | 141 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g01394 | 141 | SMART | hmgende2 | 36 | 107 | IPR009071 | - | |
Trre9g01394 | 141 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Trre9g01394 | 141 | Coils | Coil | 88 | 108 | - | - | |
Trre9g01394 | 141 | SUPERFAMILY | HMG-box | 25 | 107 | IPR036910 | - | |
Trre9g01394 | 141 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 37 | 106 | IPR009071 | - | |
Trre9g01394 | 141 | Gene3D | High mobility group box domain | 21 | 127 | IPR036910 | - | |
Trre9g01394 | 141 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 4-RELATED | 5 | 139 | IPR031061 | - | |
Trre9g01394 | 141 | Pfam | HMG (high mobility group) box | 37 | 106 | IPR009071 | - | |
Trre9g01394 | 141 | CDD | HMG-box_AtHMGB1-like | 38 | 91 | - | - | |
Trre9g01394 | 141 | MobiDBLite | consensus disorder prediction | 106 | 141 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g01394 | Trre-Chr9 | 11932317 | 11933343 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Trre9g01394 | HMG_box | 5.1e-23 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g01394 | K25507 | - | gmx:100499992 | 189.504 |