Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01390 ATGGATTCCTCGCTCACTACCCTACTTCTCTTCAACAACACCATTCAACCAGAGTTGATGAGAAGCGTGCATGTGTACCGTGGTGAATGTGATGGAGAAGGAGAAGAAAGAGAAGTTGAAAGAGAGTTTTTATTTTCTGAGAATGGTTCCTATGTTGAAATGCAAGCTACTCCAATTCTTAGGTTGTTGAAATCTTTTGTTTCTCAAGAAATTTTTGAAGGGTATACTAATGGAGTGTGGCTTTGTATTTTTGCTTTTCATGCTTATAATACTCCTCCATTTTCTCACATTCCAACTCTTTTGTTGGTTACAAGAAATCCAAAGCTTCAGGCTATTCCAAACTTACTCAATGATCTCCACATGATATACAAGTTGGTCCCGAAGGAGGAACGCAGAGATACACCAGAGAGCTCTACAGCGGAAGAATCGAAAGGAAACAACGACAATTTCCAGCCACCAAAAAAAGTCTTTCCTGTGCTTAATCAGGATCTCAATTGTCTTCCTTTTGAAGATGACGAGTCTGAGTTACTGGACGAAAAGTCCGAGTTACCGGATGACGAGACAGATTTTGAAAGTTCATCAGGTTCGGTAGGAAAGAAAAGGAGGGCAGCTAGTGACATTGTTGCAAAAATAACTTTATCGGATTTGGTCAAGTACTTTGATATGCCAATTGTAGAAGCGTCAAAGAAGCTAAATGTTGGCCTTACTGTTCTCAAAAGAAAGTGCAGAGAATTCGGTATTCCCCGCTGGCCTCACAGGAAGATCAAATCACTTGACAGTCTCATTCACGATCTTCAGGAAGAGGCGAAACATCGGGAAATGGAGGATAAAGCTGCAGCAATGGCAGTGATAAGGAGGCAAAAGATGTTGGAATGTGAAAAGGAAAACATAGAGAAGATGCCTTTCATGGACATACAAAGTGAGACTAAGAGATTCAGACAAGATGTTTTCAAGAGAAGGCACAGAGCTAGAGTTATGGAAAAACAGAATTCAACAGTAGCAAGCAATTAG 1011 0.4045 MDSSLTTLLLFNNTIQPELMRSVHVYRGECDGEGEEREVEREFLFSENGSYVEMQATPILRLLKSFVSQEIFEGYTNGVWLCIFAFHAYNTPPFSHIPTLLLVTRNPKLQAIPNLLNDLHMIYKLVPKEERRDTPESSTAEESKGNNDNFQPPKKVFPVLNQDLNCLPFEDDESELLDEKSELPDDETDFESSSGSVGKKRRAASDIVAKITLSDLVKYFDMPIVEASKKLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHREMEDKAAAMAVIRRQKMLECEKENIEKMPFMDIQSETKRFRQDVFKRRHRARVMEKQNSTVASN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01390 336 ProSiteProfiles RWP-RK domain profile. 193 278 IPR003035 -
Trre9g01390 336 MobiDBLite consensus disorder prediction 177 197 - -
Trre9g01390 336 Pfam RWP-RK domain 210 258 IPR003035 -
Trre9g01390 336 PANTHER PROTEIN RKD4 19 324 IPR044607 GO:0003700
Trre9g01390 336 MobiDBLite consensus disorder prediction 127 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01390 Trre-Chr9 11876298 11879469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01390 15 336 AtRKD Transcription Factor Family AT4G35590 48.788 1.69e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre9g01390 RWP-RK 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01390 - - gmx:100306328 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01390 9 11876298 11879469 Trre9g01390 9 11876298 11879469 ECH