Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01388 ATGGGTCAATGTTTTGCTACACTCATCTCTCGCCAACCACCACCCTCTTCCCGCAATATTCCCCACATTTCAGGTTCAAGGAGTAATAATAGTCAAGAGGACAATACTAAGAAAGAGTCATCATCATGTAATAAGAGTAAAGTTTTGGAGATGGGAAGTATTGAAAATGGTAGTAAAGAAGAAGGAAGCACAAATATAAGTGGGAAGTTTCTAGAAACGACAAATTTGAAGGAGTTTAGTTATGAAGATTTGAAAGTTGCCACAAAGAATTTCAAGTCAGATGCATTGCTTGGTGAAGGTGGCTTTGGTAAAGTTTACAAAGGTTGGTTGAATTCCGAGACACTCACCCCTACCAAAGCTGGTTCTGGAATGATAGTAGCCATTAAGAAATTGAAATCAGATAGTGTGCAAGGCGTTCAAGAATGGCAGGCTGAGATCAACTTTTTAGGAAGGATTTCTCACCCTAATTTGGTCAAGCTGTTAGGTTATTGTACAGACGGTGTTGATTTTCTCCTTGTGTATGAGTTCATGTCAAGGGGAAGCTTAGAGAGCCATCTCTTTAAAAGACATCCTAACATAGAAACACTTTCATGGAACACTAGACTCAAAATCGCTATTGATGCAGCTCGAGGATTGACATTCTTGCACTCATCAGAAAAGCAAATCATATATAGAGATTTCAAAGCTTCTAATATACTTCTCGATGTGAATTACAATGCAAAGATTTCAGATTTTGGATTGGCAAAATTTGGGCCATCTGGAGAAAATTCACATGTGACTACTCGGGTCATGGGCACGTTTGGTTATGCTGCTCCAGAATACATTGCAACAGGTCATTTGTATGTGAAGAGCGATGTTTATGGATTTGGTGTGGTGTTGCTTGAAATGCTGACAGGGTTGCAAGCACTTGATTTAAAAAGGCCAACAGAGAAGCAAAATCTAATTGAATGGATTAAGCCTTTTCTTTCTGATATAAGAAAGTTGAAAGGTAACATTGTGGATTATAGGTTAGAGGGCCAATATTCACTAAAAGCAGCATTCAAAACAGCTCAACTTATTCTTAAATGTCTTGAATCTGACCCTAAAATGCGTCCTTCTATGAAAGATGTTTTGGGGACATTAGAAGACATAAACGCAATTAAGGATAAAAGGAAAATATCCAAGAATCATTATACCATGTCTGCAAATGTGTAG 1194 0.3794 MGQCFATLISRQPPPSSRNIPHISGSRSNNSQEDNTKKESSSCNKSKVLEMGSIENGSKEEGSTNISGKFLETTNLKEFSYEDLKVATKNFKSDALLGEGGFGKVYKGWLNSETLTPTKAGSGMIVAIKKLKSDSVQGVQEWQAEINFLGRISHPNLVKLLGYCTDGVDFLLVYEFMSRGSLESHLFKRHPNIETLSWNTRLKIAIDAARGLTFLHSSEKQIIYRDFKASNILLDVNYNAKISDFGLAKFGPSGENSHVTTRVMGTFGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLQALDLKRPTEKQNLIEWIKPFLSDIRKLKGNIVDYRLEGQYSLKAAFKTAQLILKCLESDPKMRPSMKDVLGTLEDINAIKDKRKISKNHYTMSANV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01388 397 Pfam Protein tyrosine and serine/threonine kinase 94 372 IPR001245 GO:0004672|GO:0006468
Trre9g01388 397 MobiDBLite consensus disorder prediction 45 65 - -
Trre9g01388 397 FunFam Serine/threonine-protein kinase PBS1 177 392 - -
Trre9g01388 397 PANTHER OS01G0588500 PROTEIN-RELATED 35 377 - -
Trre9g01388 397 Gene3D Phosphorylase Kinase; domain 1 63 176 - -
Trre9g01388 397 MobiDBLite consensus disorder prediction 1 31 - -
Trre9g01388 397 SUPERFAMILY Protein kinase-like (PK-like) 65 375 IPR011009 -
Trre9g01388 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Trre9g01388 397 ProSiteProfiles Protein kinase domain profile. 91 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01388 397 Gene3D Transferase(Phosphotransferase) domain 1 177 396 - -
Trre9g01388 397 ProSitePatterns Protein kinases ATP-binding region signature. 97 130 IPR017441 GO:0005524
Trre9g01388 397 CDD STKc_IRAK 97 377 - -
Trre9g01388 397 MobiDBLite consensus disorder prediction 1 65 - -
Trre9g01388 397 FunFam Serine/threonine-protein kinase BIK1 58 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01388 Trre-Chr9 11839779 11846630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01388 4 391 Glycoside Hydrolase AT3G07070 42.092 1.99e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre9g01388 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01388 - - gmx:100777578 519.62