Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01387 ATGGGTGTTTGTTTTGCTTCACTCTCTGGCCAACCACCACCCTCTTCCCTCAATAGTCCTCACACTTCAGGTTCAAGGAGTAATAATAGTCAAGAGGACGATACTAATAAAGAATCATCATGTAATAAAGAAAAAGGAAGTATTGAAAATGGTAGTAAAGAAGAAGGAAACACAACTATAAGGGGGGATTTTCTAGAAATGCCAAACTTGAAGGAATTTAGTTATGGAGATTTGAAAATTGCCACAAAGAATTTCAAGTCAGATGCATTGCTTGGTGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGAATGCTGAGACACTCACCCCTACCAAAGCTGGTTCTGGAATGATAGTGGCCATCAAGAAATTGAAATCAGACAGTGTGCAAGGTGTTCAAGAATGGCAGTCAGAAATCAACTTTTTAGGAAGGATTTCACACCCTAATTTGGTCAAGCTATTGGGTTATTGTACGGACGGTGATGAATTTCTCCTTGTTTACGAGTTCATGCCAAGGGGAAGCTTAGAGAACCATCTTTTTAAAAGAAATTCTAACTTAGAACCACTTTCATGGAACACTAGACTCAAAATCGCTATTGATGCGGCTCGAGGCTTGGCATTCTTGCATTCATCAGAAAAGCAAATCATATATAGAGATTTCAAAGCTTCCAATATACTTCTCAATGTGGATTACAATGCAAAGATTTCAGATTTTGGGTTGGCGAAATTTGGGCCATCTGGAGAAAATTCACATGTTACTACTCGGATCATGGGCACGTATGGTTATGCTGCTCCAGAATACATTGCAACAGGTCATTTGTATGTGAAGAGCGATGTTTATGGATTTGGTGTGGTGCTACTTGAAATGTTGACAGGGTTGAAAGCACTTGATTTAAAAAGGCCTACAGAGAAACAAAATCTAGTTGAATGGATTAAGCCTTATCTTTCTGATAAAAAAAAGTTGAAAGGTAACATTGTGGATTGTAGATTAGAGGGCCAATATTCACCAAAAGCAGCATTTGAAACAGCTCAGCTTATTCTTAAATGTCTTGAATCTGACCCTAAAAAGCGTCCTTCTATGGAAGATGTTTTGGAAACATTAGACAACATACATAAACACTATTAA 1128 0.3785 MGVCFASLSGQPPPSSLNSPHTSGSRSNNSQEDDTNKESSCNKEKGSIENGSKEEGNTTIRGDFLEMPNLKEFSYGDLKIATKNFKSDALLGEGGFGKVYKGWLNAETLTPTKAGSGMIVAIKKLKSDSVQGVQEWQSEINFLGRISHPNLVKLLGYCTDGDEFLLVYEFMPRGSLENHLFKRNSNLEPLSWNTRLKIAIDAARGLAFLHSSEKQIIYRDFKASNILLNVDYNAKISDFGLAKFGPSGENSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLKALDLKRPTEKQNLVEWIKPYLSDKKKLKGNIVDCRLEGQYSPKAAFETAQLILKCLESDPKKRPSMEDVLETLDNIHKHY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01387 375 Pfam Protein tyrosine and serine/threonine kinase 88 368 IPR001245 GO:0004672|GO:0006468
Trre9g01387 375 Gene3D Transferase(Phosphotransferase) domain 1 171 375 - -
Trre9g01387 375 FunFam Serine/threonine-protein kinase PBS1 171 375 - -
Trre9g01387 375 Gene3D Phosphorylase Kinase; domain 1 58 170 - -
Trre9g01387 375 MobiDBLite consensus disorder prediction 1 63 - -
Trre9g01387 375 MobiDBLite consensus disorder prediction 9 30 - -
Trre9g01387 375 CDD STKc_IRAK 91 371 - -
Trre9g01387 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Trre9g01387 375 ProSiteProfiles Protein kinase domain profile. 85 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01387 375 SUPERFAMILY Protein kinase-like (PK-like) 63 367 IPR011009 -
Trre9g01387 375 PANTHER OS01G0588500 PROTEIN-RELATED 36 372 - -
Trre9g01387 375 FunFam Serine/threonine-protein kinase BIK1 52 170 - -
Trre9g01387 375 MobiDBLite consensus disorder prediction 31 51 - -
Trre9g01387 375 ProSitePatterns Protein kinases ATP-binding region signature. 91 124 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01387 Trre-Chr9 11821640 11834348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01387 71 368 Glycoside Hydrolase AT3G07070 48.161 3.54e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre9g01387 PK_Tyr_Ser-Thr 6.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01387 - - gmx:100777578 521.546