Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01383 ATGGATATTACTACAGGCAGCGTAGATCCTGCAAGCCAGTTGTCGATGTCAACAGACGTGAGAGAAGAGAGTGATAACATCTCTGGTGGGGTTGGGACTTCAAATGTTGAACACAACTCAAATGCTGATGTTGGAAGTGACGGTTCTGAAGCAGAAGCCATCGTTATAAGAGATATGGGTGATATACTGAAGATTTATATAGAGAACTTTTGTTTATCAGATCTAAGAAGGTATGAATTTGTTACATTGGATGTGGCATATATGTTTTATTGTTGGTTTGCCAGAACAACTGGGTTCTCTGTTCGTAAAGGTCAAGTGGTTAGGAATGGAAATGGTCAAATTATACAACAAACATTTTTTTGTTCATGCCAAGGATTTAGAGAGGATATGGGATTAACTAAGGAGAACCGAAACCGGGAGCCTAGGAATGAAACAAGATGTGGTTGTAAAGCAAAATGTAGAGTACACCTTGACATTTTGTCTGGAAGATGGTATGTTTCCTTACTTAATCTTGATCACAATAATCATGATCTGTTGGGTGGGACTTTGTGTGGGTTATTACCAGTCTATAGGAAGTTGAGCCAACTTGATATAGATGAGATTGAACGTAACAGGAAAGCTGGGATAAGACCTTTCCAAGTATATGGTACGATGGCTAATGAATGTGGGGGTTTTCACAAGGTAGGATTTGTAAAAAAGGATCTTTACAACCAAATTGGCAGACAACGTAAACAAATGTATTCTGATGCTCGCAATGCGGTTAAGTATCTTCGAGATCTGAAGATAAAAGATCCACTGATGTTTGTGACACACTCTATTGACAAAGAAAAAAGGCTCGAGAGGTTGTTCTGGTGTGATGGTGAAAGTAGAATGAACTATGAGATTTTTGGAGATGTTCTGGCATTTGATGCGACTTATCGAAAAAACAAGTACAATTGCCCGTTTGTTGTATTTTCTGGTGTTAATCATCATAATCAGACTATAGTTTTTGCCACAACAATTGTAACCCGAGAGACTAAAGAGACTTACGTTTGGTTGTTGGAACAACTGTTGACTGCAATGAAGGGAAAACATCCATTGTCAGTCATCACTGATGGGGACACTGCAATGAAAAATGCTATTAAAAGGACATTCCCTAATGCACATCACAGACTATGTGCCTGGCATTTGTTAAGGAATGCACAGGCCAATGTTGGGATCTCTGAATTTATGTCTTATTTAAAAAGATGCATGCTATGTGACGTGGAAGTTGTGAAATTTGAAAACATGTGGTCTGCGATGGTTCAAAAGTTTGGGTTGCAAGATAACGGTTGGGTGAAAGAATTGTATGAGAAAAAAAAGATGTGGGCAACTGCTCACATTCGAGGCAGTTTCTTTGCTGGTTTAAGAACAACTTCTCGCTGTGAAGCACTCCATAGTCACATTGCCCAGTTTCTCCATGCTAGGATCAATATGACTGACTTTGTTGGACAATTTCATAGATGCTTAACTTATTTTCGATTCAAGGAAATTGAAGCTGATTTTCAATCGAATTATGGTCAGCCAGTAATTCAGACTACCTTGCGATCGATAGAAAAATCCGCTATGAAACAGTATACCAAGGAGATATTTTTTATGTTTCGATCGGTACTTAAAAAGGCACTGCTGCTACGCATTACAGACAGCCAAGAGATGTCCACAGGTTATATATTTAATGTTTCGAAATATCATGGTGATGGAAGTGTTTGGTATGTTACATATTGTGAAGAACCATTAGATTTTAGATGTTCTTGTTTGAGGATGGAATCACTTGGATTGTCATGTGATCATATAGTAGCTGTGATGCTATATGTGGACTGTGATGAACTTCCAAATTGTTTGGTGTTACCTAGGTGGTCCAAATATGCAAAAGATGCAATCCGTGAAAAGTACGGCAGTGGGTCTCTATATTGGGATTCACAACCTGCAGCTAGATATTCTGGTATTGTCCAAATGAGTAAAGTTCTGGCTGAGTTGGTGTATGATGATATAGAGGAATATAATCATGTTGTAGACATATTGGCTGTTGAGACTAATCGGTTGAAACAAAAAGGAAATGGAGTTAATGCTGAATCATATGAAGTTTTCGACACAAATGTTGGTGAACAGGATGCAATTTTAAACCCCGATGTCGTTCGAACTAAGGGGTGTGGTGCTTTGCCAAATGCGACGCCAACTGCGCATTCTTGTGGAATTTGCGGCGTTCCAGGTCATAATAAACGAAGTTGTGCACAGAGGAACATGAACAATGCAAGTAGCCAAATCCAAACTCCTCTTGCAACGGATGAATGA 2310 0.39 MDITTGSVDPASQLSMSTDVREESDNISGGVGTSNVEHNSNADVGSDGSEAEAIVIRDMGDILKIYIENFCLSDLRRYEFVTLDVAYMFYCWFARTTGFSVRKGQVVRNGNGQIIQQTFFCSCQGFREDMGLTKENRNREPRNETRCGCKAKCRVHLDILSGRWYVSLLNLDHNNHDLLGGTLCGLLPVYRKLSQLDIDEIERNRKAGIRPFQVYGTMANECGGFHKVGFVKKDLYNQIGRQRKQMYSDARNAVKYLRDLKIKDPLMFVTHSIDKEKRLERLFWCDGESRMNYEIFGDVLAFDATYRKNKYNCPFVVFSGVNHHNQTIVFATTIVTRETKETYVWLLEQLLTAMKGKHPLSVITDGDTAMKNAIKRTFPNAHHRLCAWHLLRNAQANVGISEFMSYLKRCMLCDVEVVKFENMWSAMVQKFGLQDNGWVKELYEKKKMWATAHIRGSFFAGLRTTSRCEALHSHIAQFLHARINMTDFVGQFHRCLTYFRFKEIEADFQSNYGQPVIQTTLRSIEKSAMKQYTKEIFFMFRSVLKKALLLRITDSQEMSTGYIFNVSKYHGDGSVWYVTYCEEPLDFRCSCLRMESLGLSCDHIVAVMLYVDCDELPNCLVLPRWSKYAKDAIREKYGSGSLYWDSQPAARYSGIVQMSKVLAELVYDDIEEYNHVVDILAVETNRLKQKGNGVNAESYEVFDTNVGEQDAILNPDVVRTKGCGALPNATPTAHSCGICGVPGHNKRSCAQRNMNNASSQIQTPLATDE 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01383 769 MobiDBLite consensus disorder prediction 1 47 - -
Trre9g01383 769 Pfam MULE transposase domain 299 393 IPR018289 -
Trre9g01383 769 Pfam FAR1 DNA-binding domain 89 178 IPR004330 -
Trre9g01383 769 MobiDBLite consensus disorder prediction 1 46 - -
Trre9g01383 769 ProSiteProfiles Zinc finger SWIM-type profile. 577 612 IPR007527 GO:0008270
Trre9g01383 769 PANTHER OS01G0519700 PROTEIN 79 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01383 Trre-Chr9 11792384 11794789 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre9g01383 MULE 8.1e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01383 - - tpra:123884554 1110.9