Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01372 ATGGACTCAAATGTTTCTAACAACTCAACTTCAACCAACAACAACTCATCACCACCCAACAGCCCACCACACACCCCCAATGAAACAAACCCTAACAGCGAGGGCTTGGAAACAATTGCCAAAACCTCTGAAGAGATTTTGGCGGATTTGAGTGCCCCTAGTGATGAGGAGATAATTACGAATGGAAATGGCGATGGTGGCGCTAATGATGATGGTGGGGATCAAAATAGGGTTCCTAGGGCTATGGATGTTGCTTTGACCGTGGACGGTTCGAATGCGTGTGTGGTTGAGCAAGGTGGTCGAAATGATCGTGCCCAACCTTTTAAGAAGAGAAAGGGAAATTCACTTAGAGACCCTCCGCCCGGTAAACCAAAATGTCCGGAATGCCATAAGGAGTTTGCATCATGGAGGGCAGCTTTTGGACATATGCGCACGCATCCCGAGCGTCCGCACCGTGGATTCTTTCCTCCTCCTACTTTTACCCCCACTGCATCGGTGGTTGTGCCCCGTGTGACTGAAGACGATGGTCGTCCTAACAAGGTGGATGAAGGGGTGTTAGCGGTGGTTCGTGAACTTGTCATTGATCTTAATAGATCAATTGCGGTACCAACAGAATCCTCCGGCGCTGGTGGCAGCAGTGCAAGTGGGACAAATGCAGAAACACCTATCCCCGCCCCTGGAAATGAAGAAGGCGGCAGAAGGAAAAATGTGTTTGATTTGAATGAACTACCGCCAAACGATGAAGATGACAATGAAGATGAAGAGAAAGACATATAA 777 0.4852 MDSNVSNNSTSTNNNSSPPNSPPHTPNETNPNSEGLETIAKTSEEILADLSAPSDEEIITNGNGDGGANDDGGDQNRVPRAMDVALTVDGSNACVVEQGGRNDRAQPFKKRKGNSLRDPPPGKPKCPECHKEFASWRAAFGHMRTHPERPHRGFFPPPTFTPTASVVVPRVTEDDGRPNKVDEGVLAVVRELVIDLNRSIAVPTESSGAGGSSASGTNAETPIPAPGNEEGGRRKNVFDLNELPPNDEDDNEDEEKDI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01372 258 MobiDBLite consensus disorder prediction 199 258 - -
Trre9g01372 258 MobiDBLite consensus disorder prediction 1 81 - -
Trre9g01372 258 MobiDBLite consensus disorder prediction 103 128 - -
Trre9g01372 258 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Trre9g01372 258 MobiDBLite consensus disorder prediction 1 18 - -
Trre9g01372 258 MobiDBLite consensus disorder prediction 243 258 - -
Trre9g01372 258 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 5 166 - -
Trre9g01372 258 MobiDBLite consensus disorder prediction 200 222 - -
Trre9g01372 258 MobiDBLite consensus disorder prediction 95 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01372 Trre-Chr9 11693459 11694978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01372 117 165 C2H2 Transcription Factor Family AT4G35280 51.852 1.07e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g01372 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01372 - - tpra:123904233 210.69