Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01371 ATGTTAAGCCCTAACCCTAACTCTTCCAAGAGCTCAATAGCTTCTGCAAAAGAAACCAATCCGGCGTTTAAGAGTAGTTCTAAAGGATCCAAGGATGAAGATATCCTAAAAATCGCTCTTGAAGTGTTGGAAGAGCTGAAAATGGGCAAGAACAAGATTGGTCGTGGAGATTCAAAGACTGTGGCGGCAAATAGTTCGATGGCAGAGGTGATGGGAAGAGTGGTCACTGATGGCCGATCTATAAAGAGGAGAAAGAATAACATTGAAGTGAAAGACATTAATGCCTCCAAATATCCAATCTGCCCTAGGTGTAAGGGAGAGTTTTTCACATTCAATGCTGTGGTTGAACACTTGCGAAAAAACCCTAATTGTGCTGCTAGTGGTACCTCTAACTCATCTGAACCCGATCTTAACAAGGGTGATGATATGGTGCAAGTGCAACCAATGGAGATAGAGGGGTCTTCTAATGCTGCTGCACCTGAGCCTGCTGAATGTTTTGTAGGAAAGAAAAAGAGGGCAACCAAGGAGCATGTTGCAAAAATAACTTTATCGGATTTGGTCAAGTACTTTGATATGCCAATGCTTGAAGCATCAAAGAATCTAAAAGTTGGCACTACTGTTCTCAAAAGAAGGTGCAGAGAATTGGGTCTTCCCCGCTGGCCTCACAGGAAGATTAAATCACTTGACAGTCTCATTCATGATCTTCATCAGGAAGAGGCAGAACATAAAGAAATGAAGAATAAAGCTGCAGCAATGGTAGTTAGAAGGAAGAAGAAGATTGTGGCAAGTGAAAGAGAAAGGATAGGGAAGAATCCATTCATTTCCATACAGAAACAGACCAAGAGATTGAGACAACATGTTTTCAAGAGAAGGCACAATGCTAGAGTTATGGAAAAACAGAATTCTAAGGTAGCAAGCAAGTAG 924 0.4156 MLSPNPNSSKSSIASAKETNPAFKSSSKGSKDEDILKIALEVLEELKMGKNKIGRGDSKTVAANSSMAEVMGRVVTDGRSIKRRKNNIEVKDINASKYPICPRCKGEFFTFNAVVEHLRKNPNCAASGTSNSSEPDLNKGDDMVQVQPMEIEGSSNAAAPEPAECFVGKKKRATKEHVAKITLSDLVKYFDMPMLEASKNLKVGTTVLKRRCRELGLPRWPHRKIKSLDSLIHDLHQEEAEHKEMKNKAAAMVVRRKKKIVASERERIGKNPFISIQKQTKRLRQHVFKRRHNARVMEKQNSKVASK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01371 307 ProSiteProfiles RWP-RK domain profile. 163 249 IPR003035 -
Trre9g01371 307 MobiDBLite consensus disorder prediction 1 26 - -
Trre9g01371 307 MobiDBLite consensus disorder prediction 1 31 - -
Trre9g01371 307 Pfam RWP-RK domain 180 228 IPR003035 -
Trre9g01371 307 Coils Coil 228 248 - -
Trre9g01371 307 PANTHER PROTEIN RKD4 145 295 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01371 Trre-Chr9 11683920 11689667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01371 118 306 AtRKD Transcription Factor Family AT4G35590 46.316 1.82e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre9g01371 RWP-RK 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01371 - - tpra:123904231 412.149