Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01369 ATGGTTTTGAATGAATTGTTTCAATTTTTGTCTGTTGTACAATTTGGTTTGATGTTAGTATTTATTGTGTTTGATATAGGACCCGCGAGGTGTTATCGACAAATTAAGAACAAGCCGTATCCCAAGTCACGGTTTTGCCGTGGTGTACCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAAGAAGGGTGTTGATGAGTTCCCATTCTGTGTTCATTTGGTTAGTTGGGAGAAAGAAAATGTTTCAAGTGAGGCACTTGAAGCTGCTAGGATTGCTTGCAATAAGTATATGTCGAAGTTTGCCGGAAAGGATGCATTCCATTTAAGAGTCAGGGTTCATCCTTTCCATGTTCTTAGGATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACCGGTATGCGAGGTGCATTTGGAAAGCCACTCGGAACTTGTGCTAGAGTAGCTATTGGGCAAGTCCTTCTTTCAGTCCGCTGCAAGGATAGCAACAGTCATCATGCTCAGGAGGCCCTTCGTCGTGCTAAGTTTAAGTTTCCCGGTCGTCAAAAGATCATCGTCAGTAGGAAGTGGGGATTCACCAAGTTTAACAGAACTGATTATCTGAAATACAAGTCGGAGAACAGGATTTTGCCCGATGGTGTAAATGCAAAGCTTCTTGGGTGCCACGGACCATTGGCTAACCGTCAACCCGGACAAGCTTTTTTGAATGCTAGTGTTAATGAATAG 738 0.4295 MVLNELFQFLSVVQFGLMLVFIVFDIGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKYKSENRILPDGVNAKLLGCHGPLANRQPGQAFLNASVNE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01369 245 NCBIfam 50S ribosomal protein L16 28 197 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trre9g01369 245 FunFam 60S ribosomal protein L10 25 229 - -
Trre9g01369 245 CDD Ribosomal_L16_L10e 64 189 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trre9g01369 245 SUPERFAMILY Ribosomal protein L16p/L10e 28 196 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trre9g01369 245 Gene3D Ribosomal protein L10e/L16 27 241 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trre9g01369 245 ProSitePatterns Ribosomal protein L10e signature. 131 152 IPR018255 GO:0003735|GO:0005840|GO:0006412
Trre9g01369 245 PANTHER 60S RIBOSOMAL PROTEIN L10 28 236 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trre9g01369 245 Pfam Ribosomal protein L16p/L10e 35 189 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01369 Trre-Chr9 11664110 11665110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01369 28 242 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.442 1.14e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01369 K02866 - pvy:116105818 437.958