LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g01367	ATGGCTTCGGAGAACGAAGCTGTTCTTGCAACTACTACCCTTGAATCTGATCCTCCCACTATGTTTAACAGGAGTATTATCAAAAAGGAAAATCCTTCTACTGTATTTTACGAGGATGATGAGGTCCTTGCCTTTAGGGATTTAGCTCCTGAAGCTCCTCCTCATATTATAATCATTCCCAAAGCTAGAGACGGGTTGACTGCTCTACCTAAGGCTCAAGCCCCGCTGATTTCAAGCCAAGTCGGGTTAAATAATATTACGCTCGGTGAAGAGCAAGAATCAACTCAAAAAAGACGAAGAACTAGGTTTACTCCGGGAGAAGATAAAGTTCTCATCCAAGCATGGCTAAATGTTCCCAAGAATGCAGCTGCGGAGGCAAACCAAAGAGTAGATTCCTTTTGGTTAAGAATTAAAAATAATTACAATGAGTATCGTGGCCATTTCAAACCGAGGGGAGCGTCACAAGTAAAATCACGTTGGCATAAGATGAATAGCATAGTTAATAAATTTGTAGCGTGCTACAAAGCAGCCAATGAGAAAAAGGAAAGTGGTAGCTCTGAGGCTGACATCATGGGAGATGCATATACGCTTTTTTATCAAGATGAAGGTGAACAGTTCAAGTTAGAGCATGCATGGCGATTGTTGAAAGATGAACCTAAATGGTCAAATCCATCGTTTGAAGGAGCTAGTAAAAGAACCAAAATTTCTGCTTCTGGAGCATACTCGACCACTTCTAATCTGGACATGCCATCAAGTTGTGAATACAACGCAGCGTCACCTACTGTGGTTTGTCCAGCGGGGATAGAAGTAGAGAAAAGAAAGGAAAACCCAAAATCAGAGGAAACATCTTCCGTGGTTTGTCCAACGGGAACAGAAGTAGAGAAAAGAAAGGGAAAATCAAAATCGGAGGAAACATCTTCTGCTAATGTTGAGCTAATTGAAGTGCAAGAGATTCCAAAGACAAAAGTTCGTGTCATGGCAGAAATGGCGCGCGTCCAGGATGAACAAAATAAGTTGAAGGAGAAAGAGTTGAATATGAAGGAGAGAGAGTTTGAGTTGGAGTTCCTCTTTAAGGATACATCCGGGATGACGGCCAGACAACAACGAGACCATGAGATGCTGTGTAATGTGATTAGAGAAAAATACGGAATTATGTAA	1158	0.4154	MASENEAVLATTTLESDPPTMFNRSIIKKENPSTVFYEDDEVLAFRDLAPEAPPHIIIIPKARDGLTALPKAQAPLISSQVGLNNITLGEEQESTQKRRRTRFTPGEDKVLIQAWLNVPKNAAAEANQRVDSFWLRIKNNYNEYRGHFKPRGASQVKSRWHKMNSIVNKFVACYKAANEKKESGSSEADIMGDAYTLFYQDEGEQFKLEHAWRLLKDEPKWSNPSFEGASKRTKISASGAYSTTSNLDMPSSCEYNAASPTVVCPAGIEVEKRKENPKSEETSSVVCPTGTEVEKRKGKSKSEETSSANVELIEVQEIPKTKVRVMAEMARVQDEQNKLKEKELNMKEREFELEFLFKDTSGMTARQQRDHEMLCNVIREKYGIM	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g01367	385	PANTHER	-	82	380	-	-
	Trre9g01367	385	SUPERFAMILY	HIT-like	25	62	IPR036265	-
	Trre9g01367	385	Pfam	HIT domain	28	69	IPR011146	GO:0003824
	Trre9g01367	385	Coils	Coil	322	352	-	-
	Trre9g01367	385	Gene3D	-	1	149	IPR036265	-
	Trre9g01367	385	Pfam	No apical meristem-associated C-terminal domain	205	368	IPR029466	-
	Trre9g01367	385	PRINTS	Histidine triad family signature	22	38	IPR001310	-
	Trre9g01367	385	PRINTS	Histidine triad family signature	43	61	IPR001310	-
	Trre9g01367	385	MobiDBLite	consensus disorder prediction	272	306	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g01367	Trre-Chr9	11658047	11662187	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g01367	92	302	Glutathione S-transferase Gene Family	AT5G41240	33.036	5.32e-28	114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g01367	-		-	tpra:123893220	622.083