Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01366 ATGGGAGGTGACGCTTCCGCTGATACTTCGACGGAGCAACAATCCACCGACGGAGTTAAGATCAACATTCGTTGTTCAAATGGTTCCAAATTTTCCGTTCAAATTAGCCTCGATTCCACCGTTGGTTCCTTTAAGGATGTTGTTGCTCAGAACTGTGATATCTCTGCTGATCAACAGCGTTTGATTTATAAGGGTCGGATCCTTAAGGATGATCAAACCCTTCAAAGCTATGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCGCCTGCGAATACAACTGGTGGGACTAATACTGGTGGTGCCAATACCACAACTACTAACGCTAGAGGTGCTGGTGCTAATGAGGGTGGGGGATTAGGAGGACCTGGACTTGGAGCTTCATTGTTTCCAGGTCTAGGCGGTATCAATGGTATGGGAGGAGGAGGTGGCCTTAATAGTTTATTTGGAGCGGGACCTCCAGATCTTGAACAGTTGCAGCAACCATTTATGTCAAATCCTAATTTAGTGAGAGAAATTATGAACTCACCTGCCATGCAAAATTTATTAAATAATCCTGAGATAGTGCGCAATCTTCTAATGAGTAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCAAGCACACTTCGCCAGACACTTGAGGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCTATGAGCAATATTGAGTCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGCAACACAGGAAATGAGAGCGCCAGAGGTTTGGGAACTCAAGGTGGGCAAGCGAGGAATCAATCAACCAATCCGTCAACTACTAGTGCTGAAGCAACTTCCCCCGTACCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTCCAACTGGAGGTGCCCAAACTAACGTTAGGAGGTCAACAACTACTGGTGCGGATGCTCGGCAGCAGACACCCACTGGCTTAGGCGGGCTTGGTATGCCAGATCTCGAAGGCATGTTGGGTGGTATGCCAGATGCTGGTTCATTGTCCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCTCAAACAATGAATCAGATTCTTGGTATGAATACTGATCAGCGTGGGATGCCTGATCTAAATTCAATGAGAGAAGTGATGCAAAATCCAGAGTTTCTTCGCATGTTTTCCTCACCCGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACTCAACTTGGTCAGCAGCAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGGAACAATTTGGGGCTGGAGATGTTATCGAGCATGTTCGGTGGACTTGGAGCTGGTAGCCTAGCTGCTCCAAACAGATCAAATGAGCCACCTGAGCAATTGTATGCTACCCAACTTTCCCAACTTCAAGAGATGGGATTCTTTGACACGCAAGAGAACATAAGGGCTCTTATCGCTACATCGGGAAATGTCCATGCAGCGGTTGAGCGACTTTTGGGAAACACTGGACAGTAG 1629 0.4641 MGGDASADTSTEQQSTDGVKINIRCSNGSKFSVQISLDSTVGSFKDVVAQNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPANTTGGTNTGGANTTTTNARGAGANEGGGLGGPGLGASLFPGLGGINGMGGGGGLNSLFGAGPPDLEQLQQPFMSNPNLVREIMNSPAMQNLLNNPEIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNESARGLGTQGGQARNQSTNPSTTSAEATSPVPNTNPLPNPWSSAPTGGAQTNVRRSTTTGADARQQTPTGLGGLGMPDLEGMLGGMPDAGSLSQLMQNPAISQMMQSILSNPQTMNQILGMNTDQRGMPDLNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQTGGGTGNNLGLEMLSSMFGGLGAGSLAAPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01366 542 SMART CBM 403 438 IPR006636 -
Trre9g01366 542 SMART CBM 349 400 IPR006636 -
Trre9g01366 542 SMART CBM 145 186 IPR006636 -
Trre9g01366 542 SMART CBM 199 238 IPR006636 -
Trre9g01366 542 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Trre9g01366 542 CDD Ubl_Dsk2p_like 19 91 - -
Trre9g01366 542 Gene3D - 5 102 - -
Trre9g01366 542 MobiDBLite consensus disorder prediction 274 355 - -
Trre9g01366 542 Gene3D - 195 252 - -
Trre9g01366 542 CDD UBA_PLICs 500 538 - -
Trre9g01366 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Trre9g01366 542 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Trre9g01366 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Trre9g01366 542 PANTHER UBIQUILIN 14 537 IPR015496 -
Trre9g01366 542 FunFam Ubiquitin domain-containing protein DSK2b 16 102 - -
Trre9g01366 542 Gene3D - 482 542 - -
Trre9g01366 542 MobiDBLite consensus disorder prediction 274 314 - -
Trre9g01366 542 SMART ubq_7 19 90 IPR000626 GO:0005515
Trre9g01366 542 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Trre9g01366 542 SMART uba_6 500 538 IPR015940 -
Trre9g01366 542 SUPERFAMILY Ubiquitin-like 11 101 IPR029071 -
Trre9g01366 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Trre9g01366 542 MobiDBLite consensus disorder prediction 322 348 - -
Trre9g01366 542 FunFam Ubiquitin domain-containing protein DSK2b 483 541 - -
Trre9g01366 542 MobiDBLite consensus disorder prediction 447 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01366 Trre-Chr9 11651151 11655918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01366 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 9.40e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01366 K04523 - gmx:100797539 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01366 9 11651151 11655918 Trre9g01366 9 11651151 11655918 ECH
Trre9g01366 9 11651151 11655918 Trre15g02525 15 21194260 21199040 PCT