Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01329 ATGGTGATCGAGAACGACATTGAAAGTTGCGGTAGTAGAGCGGTTCAATCACACGCGAATCCTCGTCATCACCGTCAAAAGCTTGAAGTATACAATGAAGTTCTTCGTCGAATTCTTGATTCCGATTCCGAAGAAGCTCATGTTCCTGGTTTCGATGATCAACTATGGCTTCACTTCAATCGTCTTCCTGCTAGGTATGCATTGGATGTAAATGTGGAAAGAGCAGAAGATGTTCTTGCTCATAAAAGATTGCTCGAGTTGGCGAAGGATCCCGCTAATCGTCCCGCATTTCAAGTTCGCTTAGTACAGGTATATCCTTTTGGTAGTACACATTATAATGATTCTTCGGAGCATTCAGATCGTGCTGAGAAAGATGATGCACAAAGTTCTCTTAACTATTCTTTAAAGCAGGGAAATCATCCACCACCTACGTTTGGTTCTTCTTCTAACCTTGAAGCTCTTGCACTTCAAACAAATAAAAATAACACTGAAGATGGAGACAATGCTATGGGTGTGACACCGAATTTTAACCGGCCCATGCACGAGATTACCTTTTCAACAATTGACAAGCCTAAACTCCTTAGTCAGTTAACTTTAATACTTGGCGAGCTTGGACTGAATATTCAAGAAGCTCATGCATTTTCCACATCTGATGGGTTTTCCCTGGATGTCTTCGTCGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTTAAAGGTGTGTTGGAAAAGGAAATTTGGAAGGTTAAGGACCAATATCTGTCAAATCAGGGAATACTTTATTCCGTAAATGATCAATACCAGCCGAGGACGGAATCCTCCCCTGATTGCATACAAATACCATCTGATGGAGCTGATGTCTGGGAAATTGATCCCAGCCAGCTAAAATATGAAAACAAAGTTGGCTCTGGATCATTTGGCGACTTGTTCAGAGGCAGTTATTGCAGTCAAGATGTGGCTATCAAAGTTCTTAAGCCTGAACGCATAAGTACAGATATGCTGAAAGAGTTTGCGCAGGAAGTTTATATCATGAGGAAGATTCGACACAAGAACGTTGTTCAGTTCATTGGTGCATGTACTCGGCCACCAAATCTTTGTATTGTTACTGAGTTTATGTCTAGAGGAAGCTTATATGACTTTCTGCACAGACAAAAGGGTGTGTTTAAGCTTCCTTCTTTACTAAAAGTAGCCATTGATGTTTCCAAGGGAATGAACTATCTGCACCAAAATAATATTATTCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAATTGGTCAAGGTTGCTGATTTTGGGGTCGCCAGAGTGCAAACTCAGTCTGGAGTGATGACAGCTGAAACTGGGACATACCGCTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCAGATGTTTTCAGTTTTGGAATAGCACTTTGGGAGCTTTTAACTGGAGAGCTTCCTTACGCTTACTTAACCCCATTACAAGCAGCAGTTGGTGTGGTGCAAAAGGGTCTACGGCCTACAATTCCTAAACATGCACATCCAAGAATTTCTGAACTACTACAGCGGTGCTGGCAACAAGATCCAAAGGAGAGACCACCTTTCTCTGAAATAATTGAAATTCTTCAACACATAGCAAAAGAGGTCAATGATGAAAAAGATAAAGATAAGTCATCCCACGGTTTTCTCTCATCACTTAGGCGCGGCCATCACTGA 1722 0.421 MVIENDIESCGSRAVQSHANPRHHRQKLEVYNEVLRRILDSDSEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKRLLELAKDPANRPAFQVRLVQVYPFGSTHYNDSSEHSDRAEKDDAQSSLNYSLKQGNHPPPTFGSSSNLEALALQTNKNNTEDGDNAMGVTPNFNRPMHEITFSTIDKPKLLSQLTLILGELGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGVLEKEIWKVKDQYLSNQGILYSVNDQYQPRTESSPDCIQIPSDGADVWEIDPSQLKYENKVGSGSFGDLFRGSYCSQDVAIKVLKPERISTDMLKEFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHRQKGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENELVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYAYLTPLQAAVGVVQKGLRPTIPKHAHPRISELLQRCWQQDPKERPPFSEIIEILQHIAKEVNDEKDKDKSSHGFLSSLRRGHH 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01329 573 FunFam serine/threonine-protein kinase HT1 374 565 - -
Trre9g01329 573 ProSiteProfiles ACT domain profile. 182 262 IPR002912 -
Trre9g01329 573 FunFam Serine/threonine-protein kinase isoform 1 285 373 - -
Trre9g01329 573 Pfam Protein tyrosine and serine/threonine kinase 295 544 IPR001245 GO:0004672|GO:0006468
Trre9g01329 573 SUPERFAMILY ACT-like 180 245 IPR045865 -
Trre9g01329 573 ProSitePatterns Protein kinases ATP-binding region signature. 301 322 IPR017441 GO:0005524
Trre9g01329 573 SUPERFAMILY Protein kinase-like (PK-like) 277 544 IPR011009 -
Trre9g01329 573 MobiDBLite consensus disorder prediction 128 149 - -
Trre9g01329 573 CDD ACT_TyrKc 180 246 - -
Trre9g01329 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Trre9g01329 573 SMART serkin_6 295 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01329 573 ProSiteProfiles Protein kinase domain profile. 295 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01329 573 MobiDBLite consensus disorder prediction 552 573 - -
Trre9g01329 573 PRINTS Tyrosine kinase catalytic domain signature 452 462 IPR001245 GO:0004672|GO:0006468
Trre9g01329 573 PRINTS Tyrosine kinase catalytic domain signature 471 493 IPR001245 GO:0004672|GO:0006468
Trre9g01329 573 PRINTS Tyrosine kinase catalytic domain signature 406 424 IPR001245 GO:0004672|GO:0006468
Trre9g01329 573 PRINTS Tyrosine kinase catalytic domain signature 369 382 IPR001245 GO:0004672|GO:0006468
Trre9g01329 573 PRINTS Tyrosine kinase catalytic domain signature 515 537 IPR001245 GO:0004672|GO:0006468
Trre9g01329 573 MobiDBLite consensus disorder prediction 112 149 - -
Trre9g01329 573 Gene3D Phosphorylase Kinase; domain 1 285 373 - -
Trre9g01329 573 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 144 554 - -
Trre9g01329 573 Gene3D Transferase(Phosphotransferase) domain 1 374 568 - -
Trre9g01329 573 CDD STKc_MAP3K-like 301 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01329 Trre-Chr9 11274180 11280718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01329 8 572 MAP Kinase Kinase Kinase AT4G35780 69.298 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre9g01329 PK_Tyr_Ser-Thr 4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01329 - - gmx:100816767 1010.36