LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g01324	ATGTTCAATTTTTCCACTGCTGTGTATAATCCTCATCCTCAACCCAACACACTCTTCTTCTCTCCCTTCCCATTCTTCCATTCTTCTCTTACACCCCACCGCAAGTTTCAATCTCTCAAATTCCCCACAAAATCCAACCTCCACAATTCTCTCTCCACATCACACCAAGTTGATGATGACAACGACGAAGAACATGTCATCGGAGATTGTCTTGTCTTCGAAGAAGGAATTTTCGAAGACCCCATTTTCCCTTCCGACAACCTCGTAAACAACAAAAAAACAACACCCATTTCAAAGAAAAAGAAGAAAAAAACAACTACAGTAGTGATTGAGTCGGATAATTTGGTTCCTGATAAATGGAGAGAAGTTCAAGCAGAGTTAAACATAACTAAGAAAGATAGGCGTAAGATAGCTCAAGAAATTGAGTTCAATAGTAAGGTTTTGAAGAAGAAAAGAGGTTTGGTTCCTTTGAGGCATATAAATTTGGATAAGTATAAGGCTTATACAGAAGCTAGATTGAAACAGTTGAAACCTTTGGTTCTTGATAAACCTCCAAGGTTTAGTTTTGCTGAGAAAGAGGATGATTTTGAAGAGGAATTAAGTGATGGGTCTGGTGATGATGAGAGGGTGAAGCCTAAGAATCCTAGGTGGGCTGTTTATGGAAGAGGTTTGGATGATGTCAATGAGTTTTTGAATAGTGAGAGTTATGAACTTGCTACTAATAGAACCCAAGGTCGGCCTAAGCTGTTTACCAGGGAGGAGAAGGCTTTGCTCAGTAAGAAGAAGCCTGACTTGGAAGTTGCTACTTCAGATAAATGGCTTCCTCTGCACACTCTTGCTGCGAGCGGAGAATCTTTCCTTGTAGAAACTATGTTGAAGCACGATGTTGATATCAATGCTATGGATAAGGATGGTTTGACTGCTCTTTACAAAGCAATAATTGGAAGAAAGCATGCCATAACCAATTATCTCCTAAGAAACTCGGCCAATCCCTATGTTCAAGATAATGATGGGGCCACCTTGATGCACTACGCTGTACAAACAGCATCTGTCCCAACAATTAAAGTACTCTTATTGTATAATGTGGATATAAATCTTCCGGACAATGATGGCTGGACACCATTACATCTTGCTGTTCAAACTCAGAGAAATGATATAGTGAAGCTTCTGCTGATTAAAGGTGCTGATAAGACATTAAAAAACAAGGATGGTTTAACTCCGCTCGACCTTTGCCTTTACTCTGGTCAAACTACCAAAACATATGAGCTAATCAAGTTGTTAAAACAGCCTCCAAAACGATATAGAAGTAGAAATGAGCAACAGATGGAGCAATGA	1335	0.3955	MFNFSTAVYNPHPQPNTLFFSPFPFFHSSLTPHRKFQSLKFPTKSNLHNSLSTSHQVDDDNDEEHVIGDCLVFEEGIFEDPIFPSDNLVNNKKTTPISKKKKKKTTTVVIESDNLVPDKWREVQAELNITKKDRRKIAQEIEFNSKVLKKKRGLVPLRHINLDKYKAYTEARLKQLKPLVLDKPPRFSFAEKEDDFEEELSDGSGDDERVKPKNPRWAVYGRGLDDVNEFLNSESYELATNRTQGRPKLFTREEKALLSKKKPDLEVATSDKWLPLHTLAASGESFLVETMLKHDVDINAMDKDGLTALYKAIIGRKHAITNYLLRNSANPYVQDNDGATLMHYAVQTASVPTIKVLLLYNVDINLPDNDGWTPLHLAVQTQRNDIVKLLLIKGADKTLKNKDGLTPLDLCLYSGQTTKTYELIKLLKQPPKRYRSRNEQQMEQ	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g01324	444	MobiDBLite	consensus disorder prediction	192	212	-	-
	Trre9g01324	444	SUPERFAMILY	Ankyrin repeat	257	423	IPR036770	-
	Trre9g01324	444	PANTHER	ANKYRIN REPEAT FAMILY PROTEIN	179	432	-	-
	Trre9g01324	444	ProSiteProfiles	Ankyrin repeat profile.	271	303	IPR002110	GO:0005515
	Trre9g01324	444	FunFam	Ankyrin repeat domain-containing protein, chloroplastic	342	435	-	-
	Trre9g01324	444	Pfam	Ankyrin repeats (3 copies)	320	401	IPR002110	GO:0005515
	Trre9g01324	444	ProSiteProfiles	Ankyrin repeat profile.	370	402	IPR002110	GO:0005515
	Trre9g01324	444	ProSiteProfiles	Ankyrin repeat profile.	304	336	IPR002110	GO:0005515
	Trre9g01324	444	ProSiteProfiles	Ankyrin repeat profile.	337	369	IPR002110	GO:0005515
	Trre9g01324	444	ProSiteProfiles	Ankyrin repeat region circular profile.	370	402	-	-
	Trre9g01324	444	FunFam	Ankyrin repeat domain-containing protein, chloroplastic	244	341	-	-
	Trre9g01324	444	Gene3D	-	341	444	IPR036770	-
	Trre9g01324	444	Gene3D	-	252	340	IPR036770	-
	Trre9g01324	444	ProSiteProfiles	Ankyrin repeat region circular profile.	337	369	-	-
	Trre9g01324	444	SMART	ANK_2a	271	300	IPR002110	GO:0005515
	Trre9g01324	444	SMART	ANK_2a	337	366	IPR002110	GO:0005515
	Trre9g01324	444	SMART	ANK_2a	370	399	IPR002110	GO:0005515
	Trre9g01324	444	SMART	ANK_2a	304	333	IPR002110	GO:0005515
	Trre9g01324	444	SMART	ANK_2a	403	432	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g01324	Trre-Chr9	11185824	11190811	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g01324	276	415	Ion Channels	AT2G25600	34.286	4.22e-15	75.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g01324	-		-	mtr:11424854	544.658