Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01323 ATGGAGGATTCTCCTGTAAGAAGGCTTTCAAGGTCCCCTTCTCCATGGAGGGCTCAATCAAGATCCAGGTCTAGGTCCAGGCAGAGGCCTAGGTCTCGGTCAAGATCTCTTGAAATGCAAAGGCCTAGATCCCCCTCGAGAAGTCGTGGCAGATCAAGATCAAGAAGTCCTGATAGGAATGGTGGGGATACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGTATATCTCGAGGTTTTGCTTTTGTCACTATGGATTCTGTTGAGGGTGCAAATCGCTGTATCAAGTACCTCAACCAATCTGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCAAAGAGAAAGCGACCAAGAACTCCCACACCTGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGACCTCCTCGTGGTGACCGTGGAAGGCATCGGGGTGGATTTGGTCGTGATGATTATCCATATCATAGGTCTCCAAGGCGATCACCATATCGAGGTGGCAGGGATTATTCACCAAGGCACTCTCCCTACGGTGGAAGGTATAGGAGGGAAAGGTCTAGGTCACCTTATGCTCCATATGGTAGCCCAGATAGGAGGTATGCTCGTGGGCCTAGGTGA 699 0.495 MEDSPVRRLSRSPSPWRAQSRSRSRSRQRPRSRSRSLEMQRPRSPSRSRGRSRSRSPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEGANRCIKYLNQSVLEGRYITVERSKRKRPRTPTPGHYLGLKNTRDYGPPRGDRGRHRGGFGRDDYPYHRSPRRSPYRGGRDYSPRHSPYGGRYRRERSRSPYAPYGSPDRRYARGPR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01323 232 MobiDBLite consensus disorder prediction 138 232 - -
Trre9g01323 232 SMART rrm1_1 64 137 IPR000504 GO:0003723
Trre9g01323 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Trre9g01323 232 MobiDBLite consensus disorder prediction 1 70 - -
Trre9g01323 232 Gene3D - 8 148 IPR012677 -
Trre9g01323 232 MobiDBLite consensus disorder prediction 161 195 - -
Trre9g01323 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Trre9g01323 232 SUPERFAMILY RNA-binding domain, RBD 59 172 IPR035979 GO:0003676
Trre9g01323 232 MobiDBLite consensus disorder prediction 31 58 - -
Trre9g01323 232 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 52 223 - -
Trre9g01323 232 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01323 Trre-Chr9 11181678 11184110 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01323 59 148 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 1.13e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01323 K12897 - gmx:100527350 261.536