Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01322 ATGGAGGATTCTCCTGTAAGAAGGCTTTCAAGGTCCCCTTCTCCATGGAGGGCTCAATCAAGATCCAGGTCTAGGTCCAGGTCTCAGTCGGGATCCCTTGAAAGGCGCAGACTTAGGTCTCGGTCAAGGTCTCCTGAAATTCAAAGGCCTAGGTCTCTTTCAAGGTCTCCTGAAATGCAGCAGAGGCCTAGGTCTCTGTCAAGGTCTCCTGAAATGCAAATGCATAGGTCTCAGTCAAGGTCTCTCGAAAGGCAGAGGCCTAGGTCTCGGTCAAGATCTCTTGAAATGCAAAGGCCTAGATCCCCCTCGAGAAGTCGTGGCAGATCAAGATCAAGAAGTCCTGATAGGAATGGTGGGGATACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGTATATCTCGAGGTTTTGCTTTTGTCACTATGGATTCTGTTGAGGGTGCAAATCGCTGTATCAAGTACCTCAACCAATCTGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCAAAGAGAAAGCGACCAAGAACTCCCACACCTGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGACCTCCTCGTGGTGACCGTGGAAGGCATCGGGGTGGATTTGGTCGTGATGATTATCCATATCATAGGTCTCCAAGGCGATCACCATATCGAGGTGGCAGGGATTATTCACCAAGGCACTCTCCCTACGGTGGAAGGTATAGGAGGGAAAGGTCTAGGTCACCTTATGCTCCATATGGTAGCCCAGATAGGAGGTATGCTCGTGGGCCTAGGTGA 870 0.4966 MEDSPVRRLSRSPSPWRAQSRSRSRSRSQSGSLERRRLRSRSRSPEIQRPRSLSRSPEMQQRPRSLSRSPEMQMHRSQSRSLERQRPRSRSRSLEMQRPRSPSRSRGRSRSRSPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEGANRCIKYLNQSVLEGRYITVERSKRKRPRTPTPGHYLGLKNTRDYGPPRGDRGRHRGGFGRDDYPYHRSPRRSPYRGGRDYSPRHSPYGGRYRRERSRSPYAPYGSPDRRYARGPR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01322 289 MobiDBLite consensus disorder prediction 13 27 - -
Trre9g01322 289 SUPERFAMILY RNA-binding domain, RBD 117 229 IPR035979 GO:0003676
Trre9g01322 289 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 109 280 - -
Trre9g01322 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Trre9g01322 289 MobiDBLite consensus disorder prediction 218 252 - -
Trre9g01322 289 MobiDBLite consensus disorder prediction 195 289 - -
Trre9g01322 289 SMART rrm1_1 121 194 IPR000504 GO:0003723
Trre9g01322 289 MobiDBLite consensus disorder prediction 28 48 - -
Trre9g01322 289 MobiDBLite consensus disorder prediction 77 115 - -
Trre9g01322 289 MobiDBLite consensus disorder prediction 1 127 - -
Trre9g01322 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Trre9g01322 289 Gene3D - 58 205 IPR012677 -
Trre9g01322 289 MobiDBLite consensus disorder prediction 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01322 Trre-Chr9 11181678 11184110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01322 116 205 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 1.06e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01322 K12897 - gmx:100527350 279.641