Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01321 ATGGCGGAAACCGGCGGTGACGGAAACGGTTTCATATATCTCCACGGCGACCTCGACTTAACAATCGTAGCCGCTCGCCGGTTACCTAACATGGATATCGTTTCAGAGCGTTTTCGCCGCTGTGTAACCGCTTGCGATACTATTAAATACAGTTCAAATTCCGATGCCGCCGACGGTTCTAGTCATCGGAATCATCGTCACCGGAGAAAAATCATAACGAGTGATCCGTATGTAGCCGTTACGGTGCCACAAGCAACAGTTGCACGGACACGTGTGCTTAAGAACTCGCCGGATCCTGAGTGGAAGGAACGGTTTAACATTCCGTTAGCGCATGCGGTTGTTGATTTGGAATTTCGTGTTAAAGACGACGACGTTTTTGGTGCTCAAACTATAGGGACAGTTAAGATTCCGGCACAGAGAATTGCCTCCGGCGAGTTAATTTCCGATTGGTTTCCGCTTATCGGAGCCAATGGGAAACCGCCGAAGCCGGATACTGCGCTTAATTTAGAAATGAAGTTCACGCCAGTGGACCGGAATCCGCTATACCTTCGTGGCATTGCGGCTGATCCGGAACACAAAGGCGTGAGACATACTTATTTTCCGGTGAGGAAGGGTAGCTCTGTGAGGCTTTACCAGGATGCACATTGTCCACATGGAATGATACCGGAGATTAAGCTTGACGGTGGAAAGGTTTATAAATCGGAGAATTGTTGGGAAGATATATGTTATGCTATAACAGAAGCTCATCACATGATTTATATAGTGGGTTGGTCAATCTACCATAAGATTAAGCTTGTTAGGGAACCTTCTAGACCGTTGCCGGCGGGTGGCGATTTAACACTTGGTGATTTGCTTAAGTATAAGTCTGAAGAAGGTGTGAGAGTTTTATTGCTTGTTTGGGATGATAAAACTTCCCATGATAAAGTTTTCTTTAAGACGACTGGAGTAATGGAGACCCATGATGAGGAAACTAGGAAGTTTTTCAAGCATTCTTCTGTCATGTGCGTTTTGGCGCCTCGCTATGCTAGCAGTAAGATGAGCTTCTTTAAGCAACAGGTTGTTGGAACCGTTTTCACACACCACCAAAAATGTGTTATTTTGGATTCACAGGCTGCTGGTAATAACAGAAAGATTACCACTTTTATAGGAGGTCTTGATATGTGTGATGGTCGTTATGATACACCTGAGCATCGGCTTTTTCGTGACCTTGATACTGTATTTGCCGGTGATTTCCATAATCCTACATTTCCTTCTGGAACAAGGGCTCCTAGACAACCGTGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGATATTCTTATTAATTTCGAACAGCGATGGAGAAAATCAACCAAGTGGAAAGAGTTTGCAATTCTTTTCAAAAAAGCATCTCAGTGGAATGATGATGCTTTAATAAGAGTAGAACGCATCTCGTGGATATTAAGTCCTTCTAATCCTCCCTCAAAGAATAATTTTACAACTATTCCAGAGGACGATCCTTTGGTATGGGTTTCCAGGGAAGATGATCCTGAAAACTGGCATGTCCAGATCTTCCGCTCCATTGACTCAGGATCCTTGAAAGGATTTCCCAAACGTTTTGAAGATGCTCTATCCCAGAATCTCATATGTGCTAAAAATTTGGTTATAGACAAAAGCATTCAAACAGGATACATCCAAGCTATCAGATCTGCTCAACATTTCATTTATATTGAAAACCAATATTTCATTGGATCTTCATATGCATGGCCATCTTACAAAGATGCAGGGGCTGATAATCTTATCCCAATGGAGTTGGCACTGAAAATTGCTAGTAAAATTAAAGCTAATGAGAGATTTGCTATTTATATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAATCTGGAGCTGTGCAAGAAATCCTTTTCTGGCAGGGTCAGACAATGCAAATGATGTATAATGTTGTTGCTAACGCATTGAAATCAATGCAACTTAGTGATGTGCACCCACAAGATTACCTCAATTTCTATTGCCTTGGTAATCGGGAAAACTTCAATGAAGAAAACTCAAGCTCAAATGGTGCTCCGATCTCTGGAGCATATAAATACCGCCGAAATATGATTTATGTGCATGCCAAGGGAATGATCGTGGATGATGAATATGTTATAGTGGGATCTGCTAACATAAACCAAAGATCTATGGCTGGTACTAAAGATACCGAGATAGCTATGGGTTCATATCAACCCCATCACACATGGTCTGCGAGGAAAAAACATCCACATGGCCAGATTTATGGTTACAGAATGTCACTTTGGGCAGAACATCTTGACATGTTAGATGAAACTTTTAAAGAACCAGAGAGATTGGAGTGTGTGCGTAAAGTGAATGAAGTTGCAAACAATAATTGGAGAATTTACTCTTCTGAAGATATGTCACAAGATATGTCACTGCAGGGACATCTTCTTAAGTATCCTGTACAGATAGATTCTGATGGCCAAATCAGTTCATTACCTGATTGTGAGAATTTCCCAGATGCTGGTGGGAAGATATTGGGGGCTCATTCCGCGACAATTCCAGATATCTTAACAACGTAA 2583 0.4208 MAETGGDGNGFIYLHGDLDLTIVAARRLPNMDIVSERFRRCVTACDTIKYSSNSDAADGSSHRNHRHRRKIITSDPYVAVTVPQATVARTRVLKNSPDPEWKERFNIPLAHAVVDLEFRVKDDDVFGAQTIGTVKIPAQRIASGELISDWFPLIGANGKPPKPDTALNLEMKFTPVDRNPLYLRGIAADPEHKGVRHTYFPVRKGSSVRLYQDAHCPHGMIPEIKLDGGKVYKSENCWEDICYAITEAHHMIYIVGWSIYHKIKLVREPSRPLPAGGDLTLGDLLKYKSEEGVRVLLLVWDDKTSHDKVFFKTTGVMETHDEETRKFFKHSSVMCVLAPRYASSKMSFFKQQVVGTVFTHHQKCVILDSQAAGNNRKITTFIGGLDMCDGRYDTPEHRLFRDLDTVFAGDFHNPTFPSGTRAPRQPWHDLHCRIDGPAAYDILINFEQRWRKSTKWKEFAILFKKASQWNDDALIRVERISWILSPSNPPSKNNFTTIPEDDPLVWVSREDDPENWHVQIFRSIDSGSLKGFPKRFEDALSQNLICAKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIKANERFAIYIVLPMWPEGDPKSGAVQEILFWQGQTMQMMYNVVANALKSMQLSDVHPQDYLNFYCLGNRENFNEENSSSNGAPISGAYKYRRNMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGSYQPHHTWSARKKHPHGQIYGYRMSLWAEHLDMLDETFKEPERLECVRKVNEVANNNWRIYSSEDMSQDMSLQGHLLKYPVQIDSDGQISSLPDCENFPDAGGKILGAHSATIPDILTT 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01321 860 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 176 IPR035892 -
Trre9g01321 860 Pfam Phospholipase D Active site motif 702 729 IPR001736 GO:0003824
Trre9g01321 860 Pfam Phospholipase D Active site motif 356 391 IPR001736 GO:0003824
Trre9g01321 860 SMART C2_3c 17 150 IPR000008 -
Trre9g01321 860 Pfam C2 domain 16 153 IPR000008 -
Trre9g01321 860 FunFam Phospholipase D delta 228 472 - -
Trre9g01321 860 Gene3D Endonuclease Chain A 531 751 - -
Trre9g01321 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 356 391 IPR001736 GO:0003824
Trre9g01321 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Trre9g01321 860 SUPERFAMILY Phospholipase D/nuclease 553 786 - -
Trre9g01321 860 Pfam Phospholipase D C terminal 776 849 IPR024632 -
Trre9g01321 860 PIRSF PLD_plant 5 860 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre9g01321 860 SUPERFAMILY Phospholipase D/nuclease 198 462 - -
Trre9g01321 860 Gene3D Endonuclease Chain A 225 475 - -
Trre9g01321 860 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
Trre9g01321 860 Gene3D C2 domain 14 184 IPR035892 -
Trre9g01321 860 SMART pld_4 702 729 IPR001736 GO:0003824
Trre9g01321 860 SMART pld_4 356 391 IPR001736 GO:0003824
Trre9g01321 860 CDD C2_plant_PLD 12 174 - -
Trre9g01321 860 PANTHER PHOSPHOLIPASE D 12 848 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01321 Trre-Chr9 11172936 11179849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01321 12 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.742 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01321 K01115 - gmx:100801787 1484.16