Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01309 ATGGATGTTGGTGTTACGAATGATGTGCAGGCTATAATCACTGTGAATGCCAGCAGCACCAAAGGGGTTTATGAGGTGAGGGTGTTGAGGAAGTGGAGAGTCACCGATAGTTCGGCTACTCAGACGATTGCATCCGTTGATATGGTTCTTATCGATCGAAGTGGCCATAAGATCCAGGCATCTATTCCAAGTAGCTTGCTCTCTCAGTTTGATGATCAGATCGTTGAGGGGAGGGTGTACCGTATGTCAGGATTTACAGTCAAGCATAACCTTGGTGTCTTGGTTGCGAGTTATCATAGGTTCATATTTATATTTAATGAAAACACCAAGGTGGATCCTTCTGATAGCTGCTTCATTCCCTCTTATGGATTTTCCTTGATTGCTGTTGAAAACGTTCTATTGAAAAAATTTAATTATGGCTATATGGTTGACGTTGTCGGTGTTGTGACGAAGGTGAAGCACGACAAAAACTTTTATCCAGATGGTCGAGTTACTAGATCTGTCACATTCAAGCTAAATGATCAGTGGAAGGGTTTTTGGTGTGAAGTAACTGGTGATCTTGTGGATGAATTCCACAAGAATGTTCTATCTGCTACCGATGGACTGCCTATCATTGTCTTGCAGTTTGCACGGATATGTATTGTTCAAGGTGCTACGATGGTAAAGGGGATCGAGGGTGTGACTAAGGTGTATGTCAACCCACATGTTGCTGAGGTGATCAACTTTAGGAATGGGTTGATTGAATACCTGAGTGCGAGTTCAAATTACTTTGGTCTGCGTCGTCGATCTAATCGCGTTCCTTTCTCGCATAATTTGGACTTTGTTAAAAATCATCCTGTCAAAACTTTGCATGGGCTGGAGCGCAATCCTGAAATTGGAACATTTATTGTGAATGCAAGAATGGTTGACATCGTTCATCTTGATCCGTGGTGGTACCCAATATGTGAATGCTTTGATTTGTTCACGAAGTACATTGGAGCATTTCATTGCACTAAGTGCTATGCCAAAAAATTGATTGTTGCTCCTAAGGTTAGGTTAACCATTGGAGTTAAGGATCAAACTGGCTACACACTCTTCCATGTGTTTGATCATGTTATGATTGACATTGCTGCTGTCAATACTCCTATCAAGGCAATTAACTCTGATGAGTTTTATAAAGCATTTAGTCAAATGATGGGGAAGAGTATAATGTTCATAGTGAATAAATTTTCGCATGATCCTCATTTCATGCAATCCCCGTTTGAAATTCTTCGTGTATCTAACGAAGATTCTGTTATTAAGTACTTTACGGATCGGGGGTTGTGTAAAACTCCTTCTAAGGTTGTTAAGGCAAGGCCCATGGGCGCTCTGAAGCAAGTGACTTTTTGCAGATCAATTCGCACTACTCATCAAACCACTGATCTTCTTGAAGAATATGTTTATGGCGCCTATCCAAACATGAGGGATGATGAGGCTGGTCCTTCCAATGGTTCCAAGCGAGCTAGAGTTTGA 1491 0.4138 MDVGVTNDVQAIITVNASSTKGVYEVRVLRKWRVTDSSATQTIASVDMVLIDRSGHKIQASIPSSLLSQFDDQIVEGRVYRMSGFTVKHNLGVLVASYHRFIFIFNENTKVDPSDSCFIPSYGFSLIAVENVLLKKFNYGYMVDVVGVVTKVKHDKNFYPDGRVTRSVTFKLNDQWKGFWCEVTGDLVDEFHKNVLSATDGLPIIVLQFARICIVQGATMVKGIEGVTKVYVNPHVAEVINFRNGLIEYLSASSNYFGLRRRSNRVPFSHNLDFVKNHPVKTLHGLERNPEIGTFIVNARMVDIVHLDPWWYPICECFDLFTKYIGAFHCTKCYAKKLIVAPKVRLTIGVKDQTGYTLFHVFDHVMIDIAAVNTPIKAINSDEFYKAFSQMMGKSIMFIVNKFSHDPHFMQSPFEILRVSNEDSVIKYFTDRGLCKTPSKVVKARPMGALKQVTFCRSIRTTHQTTDLLEEYVYGAYPNMRDDEAGPSNGSKRARV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01309 496 Gene3D - 273 421 IPR012340 -
Trre9g01309 496 SUPERFAMILY Nucleic acid-binding proteins 26 115 IPR012340 -
Trre9g01309 496 SUPERFAMILY Nucleic acid-binding proteins 135 244 IPR012340 -
Trre9g01309 496 CDD RPA1_DBD_B_like 156 239 - -
Trre9g01309 496 Pfam Domain of unknown function DUF223 48 116 IPR003871 -
Trre9g01309 496 CDD RPA1_DBD_A_like 26 111 - -
Trre9g01309 496 SUPERFAMILY Nucleic acid-binding proteins 295 400 IPR012340 -
Trre9g01309 496 Gene3D - 119 251 IPR012340 -
Trre9g01309 496 Gene3D - 9 116 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01309 Trre-Chr9 11079366 11081698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01309 50 369 Core DNA Replication Machinery Family AT2G06510 21.958 9.47e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01309 - - tpra:123914763 503.442