Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01292 ATGGATTTTGTACCAAATCCATGTCCTTCTCGTTCATCTTTGTTCGGTTCCTTTGGAAATCTTGTTGACAAGGTTAAACAATTTGGTACCCTTGCAATTTCTGCTATCATTGGGAACATTTTCTCTGCGATCTTGACCTTTTGCTTTGCATTAGTGGGGACGTTATTGGGAGCTATGACAGGAGCTTTGATAGGTCAAGAAACTGAGAGTGGTTTCATTCGAGGTGCCGCCGTTGGTGCTATATCAGGAGCTGTTTTTTCCATTGAAGTTTTTGAATCTTCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGTTGTCTTTTATATTTGATTGATGTTATTGCTAGCTTGTTGAGTGGGAGACTTGTGCGTGAGAGGATCGGTCCTGCTATGTTGAGTGCAGTTCAAAGTCAGATGGGTGCTGTTGAAACAAGCTTTGACGAGGTTCAAAACATCTTTGACATTGGTGGTTCCAAAGGGTTATCCGTAGATTCGGTTGCGAAAATCCCAAAAATTAAAATCACCACTGACAATATTGATGCATCAGAGGAGAAAGTTTCTTGTTCAGTTTGTCTCCAGGACTTTCAAGTTGGAGAGACAGTTAGAAGTTTACCTCATTGTCATCACATGTTTCATCTCCCTTGCATAGATATGTGGCTCTTAAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTGA 705 0.4128 MDFVPNPCPSRSSLFGSFGNLVDKVKQFGTLAISAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDIGGSKGLSVDSVAKIPKIKITTDNIDASEEKVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01292 234 SMART ring_2 189 230 IPR001841 -
Trre9g01292 234 FunFam NEP1-interacting protein-like 1 150 234 - -
Trre9g01292 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Trre9g01292 234 Pfam Ring finger domain 188 231 IPR001841 -
Trre9g01292 234 CDD RING-H2_NIPL1-like 188 231 - -
Trre9g01292 234 SUPERFAMILY RING/U-box 181 234 - -
Trre9g01292 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Trre9g01292 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 233 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01292 Trre-Chr9 10943725 10945454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01292 20 234 C3H Transcription Factor Family AT5G66070 76.744 2.61e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01292 - - lja:Lj2g3v1670720.1 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01292 9 10943725 10945454 Trre15g02578 15 21722684 21725164 PCT