Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01282 ATGACACTCAAAAGCTTTGTATCACTTCTCTTCAATTTAATTGGCCTAGAAGATTCACAAACAAACAAGGATGCAACTATACCTTCTTACATTGTTGCTACCTCAATTGTTCCAAAGAAGATCAATCAACAATCATCAGAATCTATGGAGAAAAATCATGATGTTGGTTTATGTTGTGTGTGTTTGTCAATGTTAAACAACAAAAATGAAATTCGTGTACTTCCTTGTTTGCATGAATTTCATGAGGTTTGTGTAAATAGTTGGCTAAATGGTCATCAAAAAACATGTCCATTATGTCGTTTTTCTTTGGGAGCTGAAGAAAAGTCTCATCATGCTGAAATGTTCAGTGATGAAATGCTAATATGGTTTTCTTCTTTCCATATAACTGGTATGTAA 396 0.3308 MTLKSFVSLLFNLIGLEDSQTNKDATIPSYIVATSIVPKKINQQSSESMEKNHDVGLCCVCLSMLNNKNEIRVLPCLHEFHEVCVNSWLNGHQKTCPLCRFSLGAEEKSHHAEMFSDEMLIWFSSFHITGM 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01282 131 ProSiteProfiles Zinc finger RING-type profile. 58 100 IPR001841 -
Trre9g01282 131 Pfam Ring finger domain 58 100 IPR001841 -
Trre9g01282 131 SMART ring_2 58 99 IPR001841 -
Trre9g01282 131 SUPERFAMILY RING/U-box 37 104 - -
Trre9g01282 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 106 IPR013083 -
Trre9g01282 131 PANTHER TARGET OF ERK KINASE MPK-1 40 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01282 Trre-Chr9 10847594 10847989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01282 32 101 C3H Transcription Factor Family AT3G55530 38.571 3.37e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01282 - - gmx:100809233 168.318