Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01268 ATGGTACAATCTTTTGTTCCTTTATGTTCATTGTTGCCTTATAAAATGGAGTGGAGAATCAAGGTTAGGGTTATAAGATTAGTGAAAAACAAAAGTGATTCACCTGAAGGAGATGTTAACAGTATTGATTTAATTCTGCTAGATAGCGAGAATAACAAGATTCAGGCTACCATTCCGTGTCATTTGGTTTGTCGTTTCTCCGATGATCTAAGGGAGGGTTACGTTTACGTGATATACTATTTTCGTGTGGTCAATTTTATTGATGGCCCTGTAATGTGTCATAATCATAATAGAATTATCTTTTGTCTCAACACTGAAATATCACCTTCCCAGAGTTTAACCATAGATTCATATGGGTTGGTGTTGCTCTCCTCAGATGACATAAAATCCAGGAAATATGGGAACTGTTTTTTAGTTGATGTGATTGGTGTATTGACTGCATATCAGTTTGATTTTACTGAATCGGCTTCCCAGTGTATAATTCCAGTTGTGAAATTTGAACTTGCTGATCAAAGTGGCAGATTTGCTTGTGTTATGTGTGGGAATTATGTCAACCAGTTTCGTGATTTTTTAAGTGTTTCATATGATCAAAATCCAATCGTTGTAATTCAGTTTGGAAAGATAACTTGCAATGAAGGTTTTGTGTGTGTCCAGAGTGTTGATGGATTGACTAAGTTTATGTTTAATCCTACAATACCAGAAGTTTATAAATTCAAAATTGGAATGTCCAACAGTGGTGGAATGTATCCTATTCTTTATGGCAATCCATACCCTTCTATATTGGTTACCGATGTTACACCATTTGATCGTCTTTATCCACACAAGACCTTGCATGAGTTCGTACTCACTTCAGAGTCTGGATTTTTTGTTATCTGTGCTAAAGTAGTTGGGTTGTTCCGTGTGAAAAATGGATGGTATCCGGCATGCCGGTGTGGATGTTTTTTAGATATTTGGAATGGATCTTATTTTTGTCCTAAATGTTGTGTGCATGTATTCTCGGTTACTCCTCGGTTTAAGTTGCAAATTGCTCTTGAGGATGACACCTCCACTGCCGTACTTCAATTGTCAGAACATACACTACAAGGAATACATGCCCTTAATCTTTTGGGATTGGGAACATCTAAAGCTTTGACTCAAAATGGATATAAAGCTTTTCATGGGAAAGATATTCTATTAATAGCAAACAAGAGTGCACGATCTGAGTATAGGTTTGAAGATTATGTTGAAGTTGTTAGCATGACTGACGAGGAGGGTTCTATTAGTCGGTTCCGCGAACTTGGGAAAGATTTTACCCCAACAAAGGCTATAAAAGGCGTTCCGCTTATTGAGCTGTATGGTGACCCCGATGGAAATGGTCGAATTTCAACTGTGAAATTGGTTCGAAACAAGGGGAAGAGGGCTATTGCTGAGACACGTAGCCCAGTGGAATTAGATTGCTTGGCCACTTCAGTTGCATCAATTCGAAAAGAAGTTAAGGCTAGGAAGCAATTGATAAAATGTTTTAGGCAGATCTCTGGTGAAGGATGTTCATTTATTTCAAAGTAG 1545 0.3773 MVQSFVPLCSLLPYKMEWRIKVRVIRLVKNKSDSPEGDVNSIDLILLDSENNKIQATIPCHLVCRFSDDLREGYVYVIYYFRVVNFIDGPVMCHNHNRIIFCLNTEISPSQSLTIDSYGLVLLSSDDIKSRKYGNCFLVDVIGVLTAYQFDFTESASQCIIPVVKFELADQSGRFACVMCGNYVNQFRDFLSVSYDQNPIVVIQFGKITCNEGFVCVQSVDGLTKFMFNPTIPEVYKFKIGMSNSGGMYPILYGNPYPSILVTDVTPFDRLYPHKTLHEFVLTSESGFFVICAKVVGLFRVKNGWYPACRCGCFLDIWNGSYFCPKCCVHVFSVTPRFKLQIALEDDTSTAVLQLSEHTLQGIHALNLLGLGTSKALTQNGYKAFHGKDILLIANKSARSEYRFEDYVEVVSMTDEEGSISRFRELGKDFTPTKAIKGVPLIELYGDPDGNGRISTVKLVRNKGKRAIAETRSPVELDCLATSVASIRKEVKARKQLIKCFRQISGEGCSFISK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01268 514 CDD RPA1_DBD_B_like 140 235 - -
Trre9g01268 514 Gene3D - 114 248 IPR012340 -
Trre9g01268 514 SUPERFAMILY Nucleic acid-binding proteins 126 239 IPR012340 -
Trre9g01268 514 CDD RPA1_DBD_A_like 19 107 - -
Trre9g01268 514 Gene3D - 2 109 IPR012340 -
Trre9g01268 514 Gene3D - 270 382 IPR012340 -
Trre9g01268 514 SUPERFAMILY Nucleic acid-binding proteins 273 359 IPR012340 -
Trre9g01268 514 SUPERFAMILY Nucleic acid-binding proteins 4 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01268 Trre-Chr9 10724679 10727310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01268 5 414 Core DNA Replication Machinery Family AT4G19130 23.007 1.45e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01268 - - tpra:123908208 414.846