Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01266 ATGGAATCGGCTTTTGATATGTTATGCGATGTTCTTCCAGCAAATCAAGGATGGAAAATTAAAGTGCGTGTAATTCGTTTGTGGCCTGTGTATTCTTTCATGAAACCTGATGAGATTAATTCATTGGAAATGGTTCTACTGGATGATAAGGGTGGAAAGATTAATGCCTCTATTAGGAAACAGTTGCTATATCTCTTTGAAAATAAAATCAAGGAGGGAGAAGTGTATATGATGTCATGTCTGTCTGTAATATCAAGCGCTGGTTCTTATAGATCAACTTTGCATCCTTACAAGCTTTTGTTTCAGATGAAAACCAAGGTTAAGCCTTGTGAGAATCCTGCAATCCCTTTATATGGGTTTTCTTTTACTGAACTGGCAGATGTATGCTCCCATACTTCTGAGTATGATTTCTTAATAGATGTTATTGGAGTAATGACTGGTTTATCAAGTGAGAAGGAGTATATTCGAAATGGTAACGTTACTAAGATGATTGTGTTGGAGTTAACTGATCAAAGTGGCAAGTGTGAGTGTGCACTATTTGGTGAATATGTTGACCAATTGCAAAGATTCATGATATCATCTCCATCTGCTAAGCCAGTGCTGGTGATACAGTTTGCTAAGATAAAAATATTTAGAGACAAAGTTTCTATACAGAATGTTATGAATGCTACTAGGTTGTTGATTGATCCTGACATTGAAGAAGTTACTAATTTGAAAATTGGGCTTGATATGGAGGGTATTGATGTTTCTTCAGCTGTACCTTTACTTGGTCCTAGAGTTAGGCCTTCAATTCAGGATGATTTTCTTGGGATTTATCCAAAGAAAAAATTAGAGCAACTTGAATCATTGTATGAGGAAGGTACTTTCGTTGTTAGTGCTCTTATTGACAGCTTCGTAGAGGGAGAAAGTTGGTGGTATCCTGCTTGCAAATGTCATAGGGGTGTTACAGCTGATTCTGGTTCCTTTTATTGTAAGGGTTGTGTGAAGCATGTGAATCTTATGATTCCTAGGTTCCGGGTTAAGGTAAATGTAGTTGACGGTGTTGGCAGTGCTATGTTTGTTATTTTTGATGGTGATATGGAATATTTACTTGGTGGTAAAAAGTGTTCTTCTTTGGTTGCTGCCACCAAGGGTGGGGAGAATGGATCGTATCCTCTTGATTTCAATGTCATCAAGAATCTAAGATTGCTGTTTAAGGTTGAGAAGAAGATTTTTCTTGGAGGTCGTTTTGACCCCTCTTATCGTGTTAAGAGGGTTTGTAAAGAAACCGAGGTCATTGACTCTTTTGATTTGTTAGATTCTGATTATTCAGACAATGAGGATGTTAACAAGAGTGTATCGCCATCCAGTAAACTGGCTGGTACTGGTCTTGATGATATTGAAGCTCAAGAGTCTTTGAAATTTAGTGATGAAGTTTTAGTCACACCTGATGATGATGTTTCTGTTGTTGTTGAGTCTGGTTTGGAAGTGGAAAATGTTGGGCACGATTCTGATAGTGATGTTACCATTGGATCATCTCTTGCTAAAAGAAAGAGGACCAAAAAGTTTAATAATAGAGCTGCCAAAAGGAATTTGAATGACGTGTTTGATGCATCTCTCGATAAACCTGCAGGGTCCTCCAAAGTTTCAAAAAAATGA 1638 0.3748 MESAFDMLCDVLPANQGWKIKVRVIRLWPVYSFMKPDEINSLEMVLLDDKGGKINASIRKQLLYLFENKIKEGEVYMMSCLSVISSAGSYRSTLHPYKLLFQMKTKVKPCENPAIPLYGFSFTELADVCSHTSEYDFLIDVIGVMTGLSSEKEYIRNGNVTKMIVLELTDQSGKCECALFGEYVDQLQRFMISSPSAKPVLVIQFAKIKIFRDKVSIQNVMNATRLLIDPDIEEVTNLKIGLDMEGIDVSSAVPLLGPRVRPSIQDDFLGIYPKKKLEQLESLYEEGTFVVSALIDSFVEGESWWYPACKCHRGVTADSGSFYCKGCVKHVNLMIPRFRVKVNVVDGVGSAMFVIFDGDMEYLLGGKKCSSLVAATKGGENGSYPLDFNVIKNLRLLFKVEKKIFLGGRFDPSYRVKRVCKETEVIDSFDLLDSDYSDNEDVNKSVSPSSKLAGTGLDDIEAQESLKFSDEVLVTPDDDVSVVVESGLEVENVGHDSDSDVTIGSSLAKRKRTKKFNNRAAKRNLNDVFDASLDKPAGSSKVSKK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01266 545 CDD RPA1_DBD_B_like 140 235 - -
Trre9g01266 545 Gene3D - 7 112 IPR012340 -
Trre9g01266 545 PANTHER OS03G0429900 PROTEIN 288 399 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g01266 545 Pfam Domain of unknown function DUF223 43 129 IPR003871 -
Trre9g01266 545 SUPERFAMILY Nucleic acid-binding proteins 286 384 IPR012340 -
Trre9g01266 545 CDD RPA1_DBD_A_like 19 107 - -
Trre9g01266 545 SUPERFAMILY Nucleic acid-binding proteins 120 247 IPR012340 -
Trre9g01266 545 Gene3D - 272 428 IPR012340 -
Trre9g01266 545 Gene3D - 114 249 IPR012340 -
Trre9g01266 545 Pfam Replication factor-A C terminal domain 290 401 IPR013955 -
Trre9g01266 545 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01266 Trre-Chr9 10717832 10720339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01266 13 365 Core DNA Replication Machinery Family AT2G06510 26.702 2.19e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01266 - - tpra:123908197 613.609