Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01249 ATGGGTAATAACTATAGATACATGTTTAATAGACTATTCAAGTTTGCAAATTCATGGAAGAAAAGTAACACACCAAGAGGTAGAAGAATTTTCAACAGAGATGTTGAAAAAGAGCAATTTCAATATGCTAGTAGTCATTGTCTTTCATCATACTACAGTGTTTTTGTGGTTAGATTAGCAATCATGGTAATGTTAGCTATCTTGATAGGACTATTGACCATATTAACATGGCATTTTACGAAGATTTATACGGCGAAATCATTGAGTAGTTTGGCGTATGGTTTGCGTTATGAACTTCTACAACGTCCGATTTTGAGGATGTGGAATATTTTGAACTCGACTTCTGAAATTACAACAGCTCAAGTCAAGTTATCTCAGTATGTTATCAGACGTTATAGCAATCCTGCATCTCAAGCAGAACAAGTTGAGCAGTTATATGAAGCAATGAGAGCAGTAACATGGTCACTATTTGCTAGCAGAAAAGCTCTAAACTCAATAACAATCAATTACAAGAATGGATTTGTTCAAGCATTCCATAGAGATCTTAAAGATAACAATACATTTTACATTTACTCAGATCTTTCAAATTACTCAATGGTTGCGACGACTTCTAACATGGTCAATACACTTTCAGCTCATCAAGCATGGGATGATAAAACAATTCATGGTAATTTTTCAGCAATTTGGTATAGAGAACCACTTGATCCGGTAACAGGCGAAAAAATCGGAAAAGCGATGAAAATAGCACCGGAAGATTTAATAAACATAGCAGGACTTTCACAAGTTCCTGATGGTGTAGCTACATGGCATGTAGCAGTTAGTAAGTTTACAGATTCGCCGTTGCTTTCGGCTGCATTACCTGTTTGGGATTCTGAAAATAAAAGTATTATGGCTGTTGTTGGTGTAACAACTGCTTTTTATAGTGTTGGACAGTTAATGAGAGAACTTGTTGAAATGCATAGTGGTCATATGTATTTAACTTCTCAACAAGGTTATTTACTTGCAACTTCTACAAGTGCACCTTTGCTTAGTAATTCAACTAAGCCACCTAAGCTTAAAATGGCTGTGGATTGTGAAGATGGTATTATAAAACTTGGAGCTGAGTGGTTGCAGAGAACTTATGGAAATCATTTTCCTAATTCAACTCATGAGGTTCATGTTGAGAATGCTAAGCTTGGTCATCAGCAATATTATATTGACTCATTCTACCTAAACTTGAAGAGGCTTCCCTTGGTAGGTGTAATCATCATACCAAGAAAGTATATAATGGGACAAGTGGATGAAAGAGCCTTCAAAACTTTGGTTATTCTGATATCTGCATCTTTATGTATTTTAGTGATTGGATGTGTTTGTATTTTGATATTGACAAATGGAGTGTCAAAGGAAATGAATCTTAGAGCTGAATTGATTAGCCAACTTGAAGCAAGAAGGAAGGCAGAAGCATCGAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTAAGGACACCTATGGCAGCAGTAATCGGATTGCTGGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATTCGACAGTTACTCAAATAAGAAAATGTTCAACGGCTCTACTTCGTCTTCTTAATAACATATTGGATCTAAGCAAGGTGGAATCAGGAAAACTTGTACTAGAAGAAGCAGAATTCGACTTAGGACGCGAACTTGAAGGACTTGTAGATATGTTTTCTGTTCAATGTATTAATCACAATGTGGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAACTTGTTAGAGGTGATTCTGCTAGGGTGGTTCAAGTATTTGCAAATTTAATCAACAATTCAATCAAGTTTACTACATCTGGTCATGTTATTCTCCGAGGATGGTGTGAATACCCGAATTCTTGCAACGATAGTCCGAATTTTTATCTTGATCAGAAGAAATCAAGGATTATACATAAGAGCAAAGATAAGATAAATGCAAATCATGCAAAGAGAATATCTATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGAAGACACAGGCTGTGGTATTGATCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAACAAGCTGATCCATCGACTACTCGACTGCATGGAGGGACTGGTCTTGGTCTTTGCATTGTTAGGAACTTGGTTAATAAAATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAAGGAACATTGATGAGATTATGTTTGCTTCTCAGTGCACCCATGGATGTCTCGGAACAACATTGTGATGTAAATTTGACAGACAACGGCTTAGTGGTATTGCTTGCACTACAAGGCAACATGGGTAGATTAATAACATCAAAGTGGTTAACCAAAAAAGGGGTGTGCACAATGGAAGCATCTGAATGGAATGGACTAACTCAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAATCCATAATAATAACAACTTTGATGCACACTATCCAACAAATCTTGAAGGATTCAAGTCCAAATTACTCAGCATAAAAGATATGAGGAACCCAATTTTTATCATTGTTGTTGACATTGGTTTACTTGACCTAAGCACAGATATATGGAAAGAACAACTTAACTTGCTTCACAAGTATTTCGGAAGAGCAAAGTTTGTGTGGATTTTAAATCATGACACATCAAATACCATAAAGACGGAGCTTCGTCGGAAAGGGCATTTATTAATGGTTAATAAACCACTTTACAAAGGTAAAATGATTCATATTTTGGAAGCTGTTATAAAAGAGAGAAATCTTGAGCTACAAAAGAAAAATATGAAAGAAGGTGACTCACATGAGTTTCTTGAGATTGATTCTACTCATTTTGATGCTGCTACTAGCTCCGATGATTCGGACATATCTGAAATCAGTGAAAAACCAATTGTAAAGGTAATCAATGAAAATGAACATTTGGAAGAAAATAATATAAGGAAAGAAGAATCTTGTTCCTCTGAAGACAACAAAGCTAAATCGTTGTCCATTAAGGACACAACTTTTGCAATAGAGGCTCATGATAGGGTGACAAGGTCAAGAAAAGAAGTGAATGATAAGAAATCTCTTGAGGGATTAAGAATTTTGCTTGCAGAAGATACGCCGGTAATTCAAAGGGTTGCTACTATAATGCTTGAAAAAATGGGAGCTGTTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTAGAGGCTCTTAATTACATGGTCAGTTCTGAAGATTGTAGAAGAGAGTCTCTTCAGAAGGAAAGAAATTCAAGATCACAAACTGAGATTTCGGTTTGTCGTCCATACGATTTGATCCTAATGGATTGTCAGATGCCGAAGATGGATGGATATGAGGCAACAAAAGCGATAAGGAAATCGGAGGAGGGAACAGGAAAACACATTCCAATTGTTGCTCTTACAGCACATGCAATGTCTTGTGATGAAGCCAAATGCCTTAAGGTTGGCATGGATGCTTACTTAACAAAGCCGATTGATTTCAAGAAAATGGTCTCAACCATTCTCTCACTCACTAAGCCGGCATCTTGA 3549 0.3657 MGNNYRYMFNRLFKFANSWKKSNTPRGRRIFNRDVEKEQFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRRYSNPASQAEQVEQLYEAMRAVTWSLFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVATTSNMVNTLSAHQAWDDKTIHGNFSAIWYREPLDPVTGEKIGKAMKIAPEDLINIAGLSQVPDGVATWHVAVSKFTDSPLLSAALPVWDSENKSIMAVVGVTTAFYSVGQLMRELVEMHSGHMYLTSQQGYLLATSTSAPLLSNSTKPPKLKMAVDCEDGIIKLGAEWLQRTYGNHFPNSTHEVHVENAKLGHQQYYIDSFYLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQVFANLINNSIKFTTSGHVILRGWCEYPNSCNDSPNFYLDQKKSRIIHKSKDKINANHAKRISMRDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPMDVSEQHCDVNLTDNGLVVLLALQGNMGRLITSKWLTKKGVCTMEASEWNGLTQILRELFHARSSIHNNNNFDAHYPTNLEGFKSKLLSIKDMRNPIFIIVVDIGLLDLSTDIWKEQLNLLHKYFGRAKFVWILNHDTSNTIKTELRRKGHLLMVNKPLYKGKMIHILEAVIKERNLELQKKNMKEGDSHEFLEIDSTHFDAATSSDDSDISEISEKPIVKVINENEHLEENNIRKEESCSSEDNKAKSLSIKDTTFAIEAHDRVTRSRKEVNDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVEALNYMVSSEDCRRESLQKERNSRSQTEISVCRPYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKKMVSTILSLTKPAS 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01249 1182 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 755 - -
Trre9g01249 1182 Gene3D - 473 552 - -
Trre9g01249 1182 Pfam His Kinase A (phospho-acceptor) domain 486 551 IPR003661 GO:0000155|GO:0007165
Trre9g01249 1182 Coils Coil 970 990 - -
Trre9g01249 1182 SMART REC_2 1032 1174 IPR001789 GO:0000160
Trre9g01249 1182 Gene3D - 1010 1179 - -
Trre9g01249 1182 Pfam Response regulator receiver domain 1034 1174 IPR001789 GO:0000160
Trre9g01249 1182 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 473 552 IPR036097 GO:0000155|GO:0007165
Trre9g01249 1182 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 598 748 IPR003594 -
Trre9g01249 1182 SMART HKATPase_4 598 750 IPR003594 -
Trre9g01249 1182 FunFam Histidine kinase 1-like protein 473 552 - -
Trre9g01249 1182 ProSiteProfiles Histidine kinase domain profile. 492 750 IPR005467 -
Trre9g01249 1182 SUPERFAMILY CheY-like 1030 1178 IPR011006 -
Trre9g01249 1182 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 540 746 IPR036890 -
Trre9g01249 1182 ProSiteProfiles Response regulatory domain profile. 1033 1178 IPR001789 GO:0000160
Trre9g01249 1182 PRINTS Bacterial sensor protein C-terminal signature 710 728 IPR004358 GO:0016310|GO:0016772
Trre9g01249 1182 PRINTS Bacterial sensor protein C-terminal signature 734 747 IPR004358 GO:0016310|GO:0016772
Trre9g01249 1182 PRINTS Bacterial sensor protein C-terminal signature 675 689 IPR004358 GO:0016310|GO:0016772
Trre9g01249 1182 PRINTS Bacterial sensor protein C-terminal signature 693 703 IPR004358 GO:0016310|GO:0016772
Trre9g01249 1182 SMART HisKA_10 485 551 IPR003661 GO:0000155|GO:0007165
Trre9g01249 1182 CDD REC_hyHK_CKI1_RcsC-like 1034 1174 - -
Trre9g01249 1182 CDD HisKA 486 547 IPR003661 GO:0000155|GO:0007165
Trre9g01249 1182 Gene3D - 553 751 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01249 Trre-Chr9 10566660 10572962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01249 6 1182 Histidine Kinase Gene Family AT2G17820 65.662 0.0 1579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g01249 HATPase_c 4.9e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01249 - - gmx:100807543 1914.43