Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01220 ATGATCTCTTCCGTATCTCTTCCTTCTGTATCTCTCTACGCCGCTAACTTCTCCGGCAACACCGTAACACCACCGCCGTGCCGTGTCAGATCTAAACCTTTTGTAATCTCCGCTAGCGCTACAGCCACCGCTGAACCTCGTTCTACATGGACTGAACAACAACAACAACAACAGAGAACTTCTTATTTGAACATGAACACGAACTCGATCTGTTCTCCTTCATCGCTTTACGAGATCTTAGGTATATCAGCAGGTGCATCTGTTCAAGAGATTAAATCTGCTTACCGAAGACTTGCGAGAGTTTGTCATCCTGATGTGGCGGCGATTGACCGGAAAAATTCTTCCGCTGATGATTTTATGAAGATTCATTCTGCTTATTCTACTCTCTCCGATCCTGAAAAACGTGCTAATTATGATCGGAGTCTTTTCCGACGACAACAACGGCCGTTGTCCACGATGATGTCTTCTGGCTACTCGAGCCGGAAATGGGAAACGGATCAGTGTTGGTAG 510 0.4608 MISSVSLPSVSLYAANFSGNTVTPPPCRVRSKPFVISASATATAEPRSTWTEQQQQQQRTSYLNMNTNSICSPSSLYEILGISAGASVQEIKSAYRRLARVCHPDVAAIDRKNSSADDFMKIHSAYSTLSDPEKRANYDRSLFRRQQRPLSTMMSSGYSSRKWETDQCW 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01220 169 ProSitePatterns Nt-dnaJ domain signature. 119 138 IPR018253 -
Trre9g01220 169 SUPERFAMILY Chaperone J-domain 47 138 IPR036869 -
Trre9g01220 169 SMART dnaj_3 74 134 IPR001623 -
Trre9g01220 169 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 12 152 - -
Trre9g01220 169 Pfam DnaJ domain 76 139 IPR001623 -
Trre9g01220 169 PRINTS DnaJ domain signature 114 134 IPR001623 -
Trre9g01220 169 PRINTS DnaJ domain signature 77 95 IPR001623 -
Trre9g01220 169 PRINTS DnaJ domain signature 95 110 IPR001623 -
Trre9g01220 169 ProSiteProfiles dnaJ domain profile. 75 142 IPR001623 -
Trre9g01220 169 CDD DnaJ 77 131 IPR001623 -
Trre9g01220 169 Gene3D DnaJ domain 60 162 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01220 Trre-Chr9 10033398 10033907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01220 65 139 C2H2 Transcription Factor Family AT1G74250 41.772 7.16e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01220 - - gmx:100800959 216.083