Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01213 ATGGGTATATGTTTTTCTTCTACAAAGGTTGTTAGTGGTTCTAATAGCAACACAACAAACAATGAAAACCGTAAACGTAATTCAACATCAACAACAAAGACAGAAAAGGCTCCGGTGACAACAACCACAACATCAACGTCGGCGACTGCGTCGGCGACAAAGAAACGTCAAGTACCTAGCTCTAATCAACGACGTAGAGGCTCAGAAGAAGCACAAAAGAAAACCCATCAATCAAGACTTAAAGATAAAGCTAATTCACGTGTTCCTTGTGGAAAAAGAACGGATTTTGGTTATGAGAAAGATTTTGATAAGAGATTTTCTCTTGGGAAATTGTTGGGGCATGGACAATTTGGTTATACTTATGTTGGTATTGATAAATCTAATGGAGATCGTGTTGCTGTTAAAAGACTCGAGAAAGCTAAGATGGTTCTCCCTATAGCTGTTGAAGATGTAAAGAGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAATTCTATAATGCTTTTGAGGATGACTCATATGTGTACATAGTTATGGAGTTATGCGAAGGCGGAGAACTTCTAGACCGGATATTGGGCAAGAAGGACAGCCGTTATACTGAAAAAGATGCTGCAGTGGTCGTAAGGCAGATGCTGAAGGTTGCAGCTCAGTGTCATTTACATGGCTTGGTACATCGCGACATGAAGCCAGAGAATTTTCTATTCAAATCAAGCAAAGACGATTCAGCTTTAAAGGCTACTGATTTTGGTTTGTCCGATTTCATAAAACCAGGAAAGAGATTTCAAGATATTGTTGGAAGTGCTTACTACGTTGCACCAGAAGTGTTGAAACGGAAGTCGGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGACCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGAAACAAGCCTGATTTCCGGCGGAAACCATGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGTTAGTAAAAGATCCTCGGGCTAGATTAACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATCTGAGATTCCGGTTGATATATCTGTCTTGAACAACATGCGACAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCATTGAGGGCATTGGCTAGCACACTTAACGAAGGTGAGTTTTCTGATCTAAAGGATCAATTCGATGCAATAGATGTGGACAAAAATGGCGCTATTAGTCTTGAAGAGATGAGACAGGCTCTTGCTAAAGATCTTCCATGGAAGTTGAAAGAATCTCGTGTATTAGAGATATTGCAAGCGATTGACAGCAACACAGATGGATTAGTAGATTTCACCGAGTTTGTAGCAGCTACGTTACATGTACATCAATTGGAGGAACATGACTCTGAGAAGTGGCAGCAACGGTCACAGGCTGCTTTTGATAAATTTGACTTAGATAAGGATGGCTTTATTACTCCGGAGGAACTGAGAATGCATACTGGTATGAGAGGCTCAATTGATCCTCTCCTCGAGGAAGCCGATATTGACAAAGACGGAAAGATCAGCTTACCAGAATTTCGGAGACTTTTAAGAACTGCAAGCATTGGTTCTCGAAATGTATCAAGCCCAACTCAACGTAATCGAAGGATTTAG 1704 0.4079 MGICFSSTKVVSGSNSNTTNNENRKRNSTSTTKTEKAPVTTTTTSTSATASATKKRQVPSSNQRRRGSEEAQKKTHQSRLKDKANSRVPCGKRTDFGYEKDFDKRFSLGKLLGHGQFGYTYVGIDKSNGDRVAVKRLEKAKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILGKKDSRYTEKDAAVVVRQMLKVAAQCHLHGLVHRDMKPENFLFKSSKDDSALKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPVDISVLNNMRQFVKYSRLKQFALRALASTLNEGEFSDLKDQFDAIDVDKNGAISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSEKWQQRSQAAFDKFDLDKDGFITPEELRMHTGMRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNVSSPTQRNRRI 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01213 567 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Trre9g01213 567 SMART efh_1 450 478 IPR002048 GO:0005509
Trre9g01213 567 SMART efh_1 522 550 IPR002048 GO:0005509
Trre9g01213 567 SMART efh_1 492 520 IPR002048 GO:0005509
Trre9g01213 567 SMART efh_1 413 441 IPR002048 GO:0005509
Trre9g01213 567 SMART serkin_6 106 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01213 567 PANTHER SERINE/THREONINE-PROTEIN KINASE 83 535 - -
Trre9g01213 567 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Trre9g01213 567 MobiDBLite consensus disorder prediction 1 88 - -
Trre9g01213 567 MobiDBLite consensus disorder prediction 1 58 - -
Trre9g01213 567 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Trre9g01213 567 FunFam CDPK-related kinase 1 99 191 - -
Trre9g01213 567 ProSiteProfiles EF-hand calcium-binding domain profile. 526 553 IPR002048 GO:0005509
Trre9g01213 567 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Trre9g01213 567 ProSiteProfiles Protein kinase domain profile. 106 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01213 567 Pfam Protein kinase domain 108 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01213 567 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Trre9g01213 567 FunFam calcium-dependent protein kinase 28-like 192 385 - -
Trre9g01213 567 ProSiteProfiles EF-hand calcium-binding domain profile. 488 523 IPR002048 GO:0005509
Trre9g01213 567 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Trre9g01213 567 Gene3D Phosphorylase Kinase; domain 1 99 191 - -
Trre9g01213 567 FunFam Calcium-dependent protein kinase 28 407 476 - -
Trre9g01213 567 CDD STKc_CAMK 105 365 - -
Trre9g01213 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Trre9g01213 567 SUPERFAMILY EF-hand 398 549 IPR011992 -
Trre9g01213 567 Gene3D - 407 476 - -
Trre9g01213 567 Pfam EF-hand domain pair 411 475 IPR002048 GO:0005509
Trre9g01213 567 Pfam EF-hand domain pair 494 547 IPR002048 GO:0005509
Trre9g01213 567 MobiDBLite consensus disorder prediction 62 88 - -
Trre9g01213 567 Gene3D Transferase(Phosphotransferase) domain 1 192 373 - -
Trre9g01213 567 Gene3D - 383 546 - -
Trre9g01213 567 SUPERFAMILY Protein kinase-like (PK-like) 103 377 IPR011009 -
Trre9g01213 567 ProSitePatterns EF-hand calcium-binding domain. 531 543 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01213 Trre-Chr9 9997748 10002125 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01213 1 560 EF-hand Containing Proteins AT2G17890 74.386 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre9g01213 Pkinase 6.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01213 K13412 - gmx:100817249 930.628