Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01204 ATGGAACAACCTCAACAAAACCAACAAAATGAGGAAGCAGGTGGAGGTGGCAGTAGTGGAAAAGGGGGGTATATGAGCAGACAAAGTAGTACAAGATGGACACCAACAACAGATCAAATAAGAATATTGAAAGATCTTTACTACAACAATGGAATAAGATCACCAAGTGCAGAACAAATTCAGAGGATCTCTGCTAGATTAAGACAGTATGGTAAGATTGAAGGAAAAAATGTCTTTTATTGGTTTCAAAATCATAAAGCTAGAGAAAGACAGAAGAAAAGATTCACTTCTGATGTTAACAATGTTGTTCTTCCTACCATTCAAAGATCAACACCAAATAACAACAATGTTATTTCTTCTGCTAATTGGAAAGTAGTACCTGATCATGATCAGAATCAGCCTATTAATTTTCATACCAACATTTCATCTGCTGGGCTTTCTACTGCTTCATGTTCTTCTGCTGAAATGGTTACTGTAGGCCAGATTGGAAATTATGGATATGGATCTGTGCCAATGGAGAAAAGTTTTAGGGAGTGCACAATATCAGCTGGATGTAGTAGTAGTCAAGTTGGAAGCACCATAAACAATCACTTAGGATGGATTGGTCATCATGTTGATCCATATTCTTCAACTAATTATGCAAATTTATTTGGAAAAATAAAACCAAATGAAGAAATCATGGAAGAAGAAGAACAAGAACATGAAATTGAAACTCTTCCTTTATTTCCTATGCATGGTGAAGAAATTAATCATGGTGGTTATTGTAACCTCAAATCAAATTCTTCTAATTATGGTGCTGCTGCTGCTGCTTATGGTTGGTATCAAGCTGAAAATCATGGTTTCATCAATACTACTTCCTTGGAACTTAGCCTCAACACTTACACTCGTAGATCACCAGATTATGCTAATTGA 912 0.3575 MEQPQQNQQNEEAGGGGSSGKGGYMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVNNVVLPTIQRSTPNNNNVISSANWKVVPDHDQNQPINFHTNISSAGLSTASCSSAEMVTVGQIGNYGYGSVPMEKSFRECTISAGCSSSQVGSTINNHLGWIGHHVDPYSSTNYANLFGKIKPNEEIMEEEEQEHEIETLPLFPMHGEEINHGGYCNLKSNSSNYGAAAAAYGWYQAENHGFINTTSLELSLNTYTRRSPDYAN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01204 303 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 9 264 IPR044555 GO:0003700|GO:0099402
Trre9g01204 303 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g01204 303 MobiDBLite consensus disorder prediction 1 36 - -
Trre9g01204 303 Pfam Homeodomain 30 91 IPR001356 GO:0003677
Trre9g01204 303 ProSiteProfiles 'Homeobox' domain profile. 26 92 IPR001356 GO:0003677
Trre9g01204 303 SUPERFAMILY Homeodomain-like 23 97 IPR009057 -
Trre9g01204 303 CDD homeodomain 31 93 IPR001356 GO:0003677
Trre9g01204 303 SMART HOX_1 28 96 IPR001356 GO:0003677
Trre9g01204 303 MobiDBLite consensus disorder prediction 22 36 - -
Trre9g01204 303 Gene3D - 24 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01204 Trre-Chr9 9913835 9915495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01204 24 253 Wox Gene Family AT2G17950 41.065 8.56e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre9g01204 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01204 - - gmx:100803815 334.724