Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01189 ATGGGTAGGGTTATCAGGGCACAACGTAAGGGAGCAGGTTCAATTTTCAAATCTCACACACACCACCGTAAAGGACCAGCACGTTTCCGAAGTCTTGATTTCGGTGAAAGAAATGGTTACCTTAAAGGAGTAGTAACCGACATAATTCATGATCCTGGTCGTGGTGCACCACTTGCTAAGGTTACTTTTAGACATCCATTTAGGTATAAGAAACAGAATGAATTATTTGTTGCTGCTGAAGGACTTTATACTGGACAGTTTATTTATTGTGGGAAAAAAGCTACACTTGTTGTTGGTAATGTTTTGCCAATAAGATCTATTCCTGAAGGTGCTGTTATTTGTAATGTTGAACATCATGTTGGTGATCGTGGTGCTTTTGCTAGATGTTCTGGTGATTATGCTATTGTTATTAGTCATAATCCTGATAATGATACTTCTAGGGTTAAGCTACCATCTGGTGCAAAGAAGATTATTCCAAGTGGTTGCAGGGCTATGATCGGACAAGTTGCAGGTGGGGGAAGAACCGAGAAGCCACTTCTCAAGGCTGGTAATGCTTACCACAAATTTAGAGTGAAGAGGAATTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAACATCCTCACGGAGGAGGTAACCACCAACATATTGGACATGCTAGTACTGTTAGGCGTGATGCTCCTCCTGGACAGAAGGCAGGTCTCATTGCCGCTAAGAGAACTGGTCGTCTTAGAGGACAAGCTGCTGCAACTGCTGCTAAGGCCGATAATTGA 780 0.4308 MGRVIRAQRKGAGSIFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKAGLIAAKRTGRLRGQAAATAAKADN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01189 259 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 254 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trre9g01189 259 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Trre9g01189 259 PANTHER RIBOSOMAL PROTEIN L2 2 254 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trre9g01189 259 Pfam Ribosomal Proteins L2, C-terminal domain 98 227 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre9g01189 259 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre9g01189 259 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Trre9g01189 259 MobiDBLite consensus disorder prediction 210 259 - -
Trre9g01189 259 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Trre9g01189 259 Gene3D - 90 169 IPR014722 -
Trre9g01189 259 FunFam 60S ribosomal protein L8 90 169 - -
Trre9g01189 259 FunFam 60S ribosomal protein L2 170 247 - -
Trre9g01189 259 FunFam 60S ribosomal protein L2 1 86 - -
Trre9g01189 259 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Trre9g01189 259 Pfam Ribosomal Proteins L2, RNA binding domain 14 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Trre9g01189 259 Gene3D - 1 86 IPR012340 -
Trre9g01189 259 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01189 Trre-Chr9 9752179 9753564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01189 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 91.085 0.0 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01189 K02938 - mnt:21409345 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01189 9 9752179 9753564 Trre9g01189 9 9752179 9753564 ECH