Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01183 ATGGAGTCCATGGAGTCATGTGTCCCACCAGGCTTTCGCTTCCATCCAACCGATGAAGAACTAGTTGGTTATTATCTCAGAAAGAAAATCGCTTCTCAAAAAATCGATCTCGATGTTATCAGAGAGATCGATCTTTATCGTATCGAACCATGGGATCTTCAAGAGAGATGCAGGATTGGATATGAAGAGCAGAATGAGTGGTATTTTTTCAGTCACAAAGATAAAAAGTATCCAACTGGAACAAGAACTAATAGAGCTACCATGGCTGGGTTTTGGAAAGCTACAGGAAGAGATAAAGCAGTTTATGACAAGATGAAACTAATTGGGATGAGGAAGACTCTTGTTTTCTATAAAGGAAGAGCTCCTAATGGACAAAAATCTGATTGGATCATGCATGAGTATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGAAGAAGGATGGGTTGTTTGTAGAGCATTTAAGAAAAGAACAACAAATAGCCAAAGTACAAAACGAACAATTGAAGGATGGGACACAAGCTACTTCTATGAAGAAGCTCCAAGTGGTATCAACAATTCAATGGTGGATCCAATTGAGTTAATCTCAAGACAACAACCTCAAAACTATTTATCTCAAACTTACAATATGTGTAAGCAAGAGATAGAAGCATGCATGCATGCAGAACAATTTGTACAGCTTCCTCAACTTGAAAGTCCTTCATTGCCACTATTAGTAAAGAGACCAAGCACAATGTCTCTAGTATCATCCGAAATTAATAACGACGAAATTGATGACCAAAATAGGTTATTATTATTATCCAACAATAATAATAATACTACTACTACTACAACTACAAATAATGTGACTGATTGGAGAGCACTTGATAAATTTGTGGCTTCTCAACTAAGTCATGAAGTTGAAACTGATCAAGGAGTGTTATTGTCAAGTTTTGGTGCAACAAATAATAATCATAGCTCAGATATGGCATTGATGTTACTTCAACAAGCTAGTAGGGATGAAGGGACCAAGTTAAGTCCTTTTTTGAATGGAAGTTCAGATTGCAGTGATATTGGGATATGCATATTTGAAAAATGA 1080 0.3667 MESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNSQSTKRTIEGWDTSYFYEEAPSGINNSMVDPIELISRQQPQNYLSQTYNMCKQEIEACMHAEQFVQLPQLESPSLPLLVKRPSTMSLVSSEINNDEIDDQNRLLLLSNNNNNTTTTTTTNNVTDWRALDKFVASQLSHEVETDQGVLLSSFGATNNNHSSDMALMLLQQASRDEGTKLSPFLNGSSDCSDIGICIFEK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01183 359 ProSiteProfiles NAC domain profile. 8 157 IPR003441 GO:0003677|GO:0006355
Trre9g01183 359 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Trre9g01183 359 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Trre9g01183 359 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Trre9g01183 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 268 - -
Trre9g01183 359 FunFam NAC domain-containing protein 17 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01183 Trre-Chr9 9535883 9538729 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01183 1 358 NAC Transcription Factor Family AT2G18060 61.067 2.11e-152 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g01183 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01183 - - aprc:113869508 518.079