Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01180 ATGGCTTTGTCAACACTTTCAAAAACTTTTGACAAAATTTCTGAAATTAATGATTCAAAATCTTCTTGGAGTGTCAAAGCAAAAGTGATTAGATTGTGGGTTGTGAAAGACTTCAACAGAAATGATTTACCATTTTCAGTTGAAATGGTTTTAATGGATGCTGAGGGAGATCGAATTCATTGTTCAATTAGAAAGACACTATTGTACAAGTTTGCAGAACATATCAAAGAGGGCAGAGTGTATTCATTTGAAAATTTGGACTCTGCCACAAATGGTGGAAGCTACAAAACTACCAAACATGAATACAAAGTTACTTTTCAGTTTGGATCTAAAGTAACCCCACTTGGCCCAAACAAACTCAACAACCTATCTCCTTTTAAATTTGTTCCTATTGGTGAAATCAATAATGGCAGCTATGACAGCGATGTTTTAGTTGATGTTATTGGAATGTTGACTGGAGTTGGGGAAGAAAGACAATATGAAGCCCGTGGACAAAGCACCAAACTCAATGTCATTGAACTTGAGGCTGATGGGGAAAAGATTCAATGCACTCTTTTTGGTTCCTATGTTGATGAGCTCAACAATTTTCTTTCCTCCGGTGAAACACAAAATACTGCTGTTATCATCATGTTTGGAAAGGTCAAACTTTTTCAAGTTATTGATATGGAATGTGTAGAGAAACTTCATATCCAAAATTGCCTCAATTGCACCAAAGTGTTTTACAATCCTGTCAATGATGATGTTACTTCCTTAAGGAGTAGGATGGTTCAAAATCTTGACACACCATCTCCTCTCATCCTTACCCAAATCAATGCAACTCCTAGAGTTGATCCTCTCCAAGAATTTCTCTATTCCACTCCTAGGAACACTATCCAAGGGCTTCTTAATTGTGAAGAGGATGCTATTTTTGTTGTTCTTGGTACTATCAAACACATTGTCAACAATGATAATTGGTTTTATACGGCATGTGCATGCAACAAAAGTGTGTATCCTGATTCGGGCATGTATTTTTGCGAAAAATGCAACAAACATGTCAAAAATGTTTCACCAAGATTTTCCATCAAAGTTCGTGTTATGGATGATACCGATAGCGCCACATTTGTGCTTTTTGATCGTGATGCGGCTATGTTGTTCAACAAATCATGTGCCGAAGTATTGCGTAGTCGTGACACCAGGGCTGCACCCACTGTTCTTCCTGCTGAAATTAAAGCATTGGTCAATTCCACTTATCTATTCAAAGTTGAGTGCAAAGCTCCCGTGAGTCATAGGTTTGAGTCGTCTTTCCGTGTTCGCAAAATTTGCACCGACATGATTTTAATTAATCAATTCAAGTCCAAGTGGGAGAATGAAGAATCTACCTTTGCAAAAAATGCCAATGAAATGAATTCTTTGAGTGCATTGCATAATACTCAAATTGGATCTTCAGCAAACTATCTTGATACTAACAATGTTGAGCCACTAACAGCAAGTTCTACAAAGGAGAAAGAGATGAAATTGGACTGTGCAAACTTGGGCATCTCACAAGACTTAATGCCATCATTCTCTGAAGCTGTCATTGATGTTGATGACATTCCAAGTCCCAAAAAGGTTGATGCAAAGGGCAAGGCAAAAATGGATAACCATACTACCAAAGGAAAGAGAGCTTCACCTAATGATGAAACCAAAACTGAAGACATGAACCTTCCCATTAAGCTTCTCAAAAGGCCTATTAAGATTGAAAAGATCTAA 1728 0.3756 MALSTLSKTFDKISEINDSKSSWSVKAKVIRLWVVKDFNRNDLPFSVEMVLMDAEGDRIHCSIRKTLLYKFAEHIKEGRVYSFENLDSATNGGSYKTTKHEYKVTFQFGSKVTPLGPNKLNNLSPFKFVPIGEINNGSYDSDVLVDVIGMLTGVGEERQYEARGQSTKLNVIELEADGEKIQCTLFGSYVDELNNFLSSGETQNTAVIIMFGKVKLFQVIDMECVEKLHIQNCLNCTKVFYNPVNDDVTSLRSRMVQNLDTPSPLILTQINATPRVDPLQEFLYSTPRNTIQGLLNCEEDAIFVVLGTIKHIVNNDNWFYTACACNKSVYPDSGMYFCEKCNKHVKNVSPRFSIKVRVMDDTDSATFVLFDRDAAMLFNKSCAEVLRSRDTRAAPTVLPAEIKALVNSTYLFKVECKAPVSHRFESSFRVRKICTDMILINQFKSKWENEESTFAKNANEMNSLSALHNTQIGSSANYLDTNNVEPLTASSTKEKEMKLDCANLGISQDLMPSFSEAVIDVDDIPSPKKVDAKGKAKMDNHTTKGKRASPNDETKTEDMNLPIKLLKRPIKIEKI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01180 575 SUPERFAMILY Nucleic acid-binding proteins 10 114 IPR012340 -
Trre9g01180 575 Pfam Domain of unknown function DUF223 48 144 IPR003871 -
Trre9g01180 575 SUPERFAMILY Nucleic acid-binding proteins 290 442 IPR012340 -
Trre9g01180 575 CDD RPA1_DBD_C 298 417 IPR047192 -
Trre9g01180 575 Gene3D - 10 116 IPR012340 -
Trre9g01180 575 MobiDBLite consensus disorder prediction 525 560 - -
Trre9g01180 575 CDD RPA1_DBD_A_like 24 112 - -
Trre9g01180 575 Gene3D - 123 261 IPR012340 -
Trre9g01180 575 Gene3D - 284 444 IPR012340 -
Trre9g01180 575 CDD RPA1_DBD_B_like 146 255 - -
Trre9g01180 575 PANTHER OS03G0429900 PROTEIN 12 529 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g01180 575 Pfam Replication factor-A C terminal domain 303 419 IPR013955 -
Trre9g01180 575 SUPERFAMILY Nucleic acid-binding proteins 126 252 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01180 Trre-Chr9 9498292 9501061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01180 2 414 Core DNA Replication Machinery Family AT5G08020 21.528 7.32e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01180 - - mtr:120579381 526.554