Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01179 ATGGCTTTGTCAACACTTTCAAAAACTTTTGACAAAATTTCTGAAATTAATGATTCAAAATCTTCTTGGAGTGTCAAAGCAAAAGTGATTAGATTGTGGGTTGTGAAAGACTTCAACAGAAATGATTTACCATTTTCAGTTGAAATGGTTTTAATGGATGCTGAGGGAGATCGAATTCATTGTTCAATTAGAAAGACACTATTGTACAAGTTTGCAGAACATATCAAAGAGGGCAGAGTGTATTCATTTGAAAATTTGGACTCTGCCACAAATGGTGGAAGCTACAAAACTACCAAACATGAATACAAAGTTACTTTTCAGTTTGGATCTAAAGTAACCCCACTTGGCCCAAACAAACTCAACAACCTATCTCCTTTTAAATTTGTTCCTATTGGTGAAATCAATAATGGCAGCTATGACAGCGATGTTTTAGTTGATGTTATTGGAATGTTGACTGGAGTTGGGGAAGAAAGACAATATGAAGCCCGTGGACAAAGCACCAAACTCAATGTCATTGAACTTGAGGCTGATGGGGAAAAGATTCAATGCACTCTTTTTGGTTCCTATGTTGATGAGCTCAACAATTTTCTTTCCTCCGGTGAAACACAAAATACTGCTGTTATCATCATGTTTGGAAAGGTCAAACTTTTTCAAGAGAAACTTCATATCCAAAATTGCCTCAATTGCACCAAAGTGTTTTACAATCCTGTCAATGATGATGTTACTTCCTTAAGGAGTAGGATGGTTCAAAATCTTGACACACCATCTCCTCTCATCCTTACCCAAATCAATGCAACTCCTAGAGTTGATCCTCTCCAAGAATTTCTCTATTCCACTCCTAGGAACACTATCCAAGGGCTTCTTAATTGTGAAGAGGATGCTATTTTTGTTGTTCTTGGTACTATCAAACACATTGTCAACAATGATAATTGGTTTTATACGGCATGTGCATGCAACAAAAGTGTGTATCCTGATTCGGGCATGTATTTTTGCGAAAAATGCAACAAACATGTCAAAAATGTTTCACCAAGATTTTCCATCAAAGTTCGTGTTATGGATGATACCGATAGCGCCACATTTGTGCTTTTTGATCGTGATGCGGCTATGTTGTTCAACAAATCATGTGCCGAAGTATTGCGTAGTCGTGACACCAGGGCTGCACCCACTGTTCTTCCTGCTGAAATTAAAGCATTGGTCAATTCCACTTATCTATTCAAAGTTGAGTGCAAAGCTCCCGTGAGTCATAGGTTTGAGTCGTCTTTCCGTGTTCGCAAAATTTGCACCGACATGATTTTAATTAATCAATTCAAGTCCAAGTGGGAGAATGAAGAATCTACCTTTGCAAAAAATGCCAATGAAATGAATTCTTTGAGTGCATTGCATAATACTCAAATTGGATCTTCAGCAAACTATCTTGATACTAACAATGTTGAGCCACTAACAGCAAGTTCTACAAAGGAGAAAGAGATGAAATTGGACTGTGCAAACTTGGGCATCTCACAAGACTTAATGCCATCATTCTCTGAAGCTGTCATTGATGTTGATGACATTCCAAGTCCCAAAAAGGTTGATGCAAAGGGCAAGGCAAAAATGGATAACCATACTACCAAAGGAAAGAGAGCTTCACCTAATGATGAAACCAAAACTGAAGACATGAACCTTCCCATTAAGCTTCTCAAAAGGCCTATTAAGATTGAAAAGATCTAA 1707 0.3767 MALSTLSKTFDKISEINDSKSSWSVKAKVIRLWVVKDFNRNDLPFSVEMVLMDAEGDRIHCSIRKTLLYKFAEHIKEGRVYSFENLDSATNGGSYKTTKHEYKVTFQFGSKVTPLGPNKLNNLSPFKFVPIGEINNGSYDSDVLVDVIGMLTGVGEERQYEARGQSTKLNVIELEADGEKIQCTLFGSYVDELNNFLSSGETQNTAVIIMFGKVKLFQEKLHIQNCLNCTKVFYNPVNDDVTSLRSRMVQNLDTPSPLILTQINATPRVDPLQEFLYSTPRNTIQGLLNCEEDAIFVVLGTIKHIVNNDNWFYTACACNKSVYPDSGMYFCEKCNKHVKNVSPRFSIKVRVMDDTDSATFVLFDRDAAMLFNKSCAEVLRSRDTRAAPTVLPAEIKALVNSTYLFKVECKAPVSHRFESSFRVRKICTDMILINQFKSKWENEESTFAKNANEMNSLSALHNTQIGSSANYLDTNNVEPLTASSTKEKEMKLDCANLGISQDLMPSFSEAVIDVDDIPSPKKVDAKGKAKMDNHTTKGKRASPNDETKTEDMNLPIKLLKRPIKIEKI 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01179 568 SUPERFAMILY Nucleic acid-binding proteins 10 114 IPR012340 -
Trre9g01179 568 MobiDBLite consensus disorder prediction 518 553 - -
Trre9g01179 568 PANTHER OS03G0429900 PROTEIN 12 522 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g01179 568 Gene3D - 123 254 IPR012340 -
Trre9g01179 568 CDD RPA1_DBD_B_like 146 248 - -
Trre9g01179 568 CDD RPA1_DBD_A_like 24 112 - -
Trre9g01179 568 CDD RPA1_DBD_C 291 410 IPR047192 -
Trre9g01179 568 SUPERFAMILY Nucleic acid-binding proteins 283 435 IPR012340 -
Trre9g01179 568 Pfam Domain of unknown function DUF223 48 144 IPR003871 -
Trre9g01179 568 Pfam Replication factor-A C terminal domain 296 412 IPR013955 -
Trre9g01179 568 Gene3D - 277 437 IPR012340 -
Trre9g01179 568 SUPERFAMILY Nucleic acid-binding proteins 126 247 IPR012340 -
Trre9g01179 568 Gene3D - 10 116 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01179 Trre-Chr9 9498292 9501061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01179 2 407 Core DNA Replication Machinery Family AT5G08020 21.882 7.19e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01179 - - mtr:120579381 533.487